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2023-09-22Add pggb.Efraim Flashner
2023-09-22vg: Prepare for using a shared library.Efraim Flashner
2023-09-22vg: Update to 1.50.0.Efraim Flashner
2023-09-21rtg: Update package definition.Efraim Flashner
2023-09-21mummer: Update to 4.0.0rc1.Efraim Flashner
2023-09-21odgi: Add variant with glibc-hwcaps.Efraim Flashner
2023-09-21wfmash: Fix typos.Efraim Flashner
2023-09-21odgi: Update to 0.8.3.Efraim Flashner
2023-09-21Add smoothxgEfraim Flashner
2023-09-20seqwish: Update to 0.7.9.Efraim Flashner
2023-09-20gn: genenetwork2: Add htmx....* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add htmx. Munyoki Kilyungi
2023-09-20gn: javascript: Add htmx....* gn/packages/javascript.scm (javascript-htmx): Add htmx. Munyoki Kilyungi
2023-09-20remove crates existing upstreamEfraim Flashner
2023-09-20Add wfmash with glibc-hwcap libraries.Efraim Flashner
2023-09-19Add pafplotEfraim Flashner
2023-09-19Add fastixEfraim Flashner
2023-09-19Add vcfbubEfraim Flashner
2023-09-19gfaffix: Update to 0.1.5.Efraim Flashner
2023-09-19Update gem5Efraim Flashner
2023-09-19Update pluto notebook service and julia packagesEfraim Flashner
2023-09-19remove unneeded module importEfraim Flashner
2023-09-19Update pluto serverEfraim Flashner
2023-09-19update julia-visualsEfraim Flashner
2023-09-19Remove `rust-clap-4`...There is a `rust-clap-4` package upstream. Frederick Muriuki Muriithi
2023-09-06gn: gn-auth: Update yoyo and mypy...Update yoyo and mypy to allow the use of Python-3.10 Frederick Muriuki Muriithi
2023-09-05gn: genenetwork: Update mypy and yoyo...* gn/packages/genenetwork.scm: Import (guix packages). (genenetwork3): Use yoyo-migrations v8.2.0 and python-mypy v0.981. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-05gn: python: Add python-mypy-0.981...* gn/packages/python.scm (python-mypy-0.981): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-05gn: python: Add yoyo-migrations-8.2.0...* gn/packages/python.scm: Import (gnu packages databases) and (guix hg-download). (yoyo-migrations-8.2.0): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-05Adjust how native/propagated inputs are defined for GN3...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-04Revert "Pin python to python@3.8.5"...This reverts commit aaa6e53e7b623105d05e67e95186aba5b4671010. Munyoki Kilyungi
2023-09-04Pin python to python@3.8.5...* gn/packages/genenetwork.scm: (genenetwork3, genenetwork2): Using python@3.8.5 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-31Move gn-auth to (gn packages genenetwork).Arun Isaac
2023-08-30Replace `(...) with (list ...): Fixes "undefined gexp" failure....Replace the backquoted expression in the (arguments ...) section of the package definition to fix the error where the build could not find the variable gexp Frederick Muriuki Muriithi
2023-08-30Add missing `(guix gexp) module. Update package commit.Frederick Muriuki Muriithi
2023-08-25gn-auth: New packageFrederick Muriuki Muriithi
2023-07-06Remove tissue....tissue is now in upstream Guix. * gn/packages/gemini.scm: Delete file. Arun Isaac
2023-07-05gn: genenetwork3: Update to 0.1.0-3.f52247c....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-3.f52247c. Arun Isaac
2023-07-05Run genenetwork3 tests using pytest....* gn/packages/genenetwork.scm (genenetwork3)[arguments]: Replace check phase to use pytest. Arun Isaac
2023-07-04Remove deprecated #:asd-files argument....* gn/packages/lisp.scm (sbcl-defstar, sbcl-2am, sbcl-fare-memoization, sbcl-meta, sbcl-scribble), gn/packages/notebooks.scm (sbcl-nb), gn/packages/quality-control.scm (sbcl-qc): Remove #:asd-files argument. Arun Isaac
2023-06-29 gn: gemma: Fix build using latest gccpjotrp
2023-06-26Fix DirsAllowed parameter...* gn/services/databases.scm (virtuoso-shepherd-service): Remove square brackets that sorround the DirsAllowed parameter. Munyoki Kilyungi
2023-06-20Add dirs-allowed to virtuoso configsMunyoki Kilyungi
2023-06-18Remove unused twint from GN2pjotrp
2023-06-15Uncommitted genome browser changesEfraim Flashner
2023-06-15Update pluto service and dependant julia packagesEfraim Flashner
2023-06-14gn: genecup: Use correct python-h5py....* gn/packages/python.scm (python-h5py-2): New variable. * gn/packages/machine-learning.scm (tensorflow-native): Remove comments. * gn/packages/ratspub.scm (use-corrected-inputs): New procedure. (genecup-with-tensorflow-native, genecup-latest-with-tensorflow-native): Use use-corrected-inputs. Efraim Flashner
2023-04-19gn: Update GN2 to 3.11-2.bfe557dcFrederick Muriuki Muriithi
2023-04-19gn: Update GN3 to 0.1.0-2.85610fc9Frederick Muriuki Muriithi
2023-04-10vg: Use curl instead of curl-minimal....curl-minimal has been removed from upstream Guix. * gn/packages/bioinformatics.scm (vg)[inputs]: Use curl instead of curl-minimal. Arun Isaac
2023-03-24Adding ruby-lmdb packagepjotrp
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