| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-06-28 | import (gn packages genecup) module. | Frederick Muriuki Muriithi | |
| 2024-06-28 | Remove import for missing module. | Frederick Muriuki Muriithi | |
| 2024-06-21 | ratspub: remove definitions as they are replaced by genecup | Shepherd on Tux02 | |
| 2024-06-20 | Merge branch 'master' of /home/git/public/guix-bioinformatics | Shepherd on Tux02 | |
| 2024-06-20 | Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformatics | Shepherd on Tux02 | |
| 2024-06-20 | Rename penguin2->tux02 | Shepherd on Tux02 | |
| 2023-10-19 | Remove bh20-seq-resource. | Arun Isaac | |
| The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. * gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable. * gn/services/bh20-seq-resource-container.scm: Delete file. | |||
| 2023-09-19 | Update pluto notebook service and julia packages | Efraim Flashner | |
| 2023-09-19 | Update pluto server | Efraim Flashner | |
| 2023-06-26 | Fix DirsAllowed parameter | Munyoki Kilyungi | |
| * gn/services/databases.scm (virtuoso-shepherd-service): Remove square brackets that sorround the DirsAllowed parameter. | |||
| 2023-06-20 | Add dirs-allowed to virtuoso configs | Munyoki Kilyungi | |
| 2023-06-15 | Uncommitted genome browser changes | Efraim Flashner | |
| 2023-06-15 | Update pluto service and dependant julia packages | Efraim Flashner | |
| 2023-03-22 | bh20-seq-resource-container.scm updates | Efraim Flashner | |
| 2023-03-22 | bh20-seq-resource: Add version without profile collisions. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bh20-seq-resource-for-service): New variable. * gn/services/bh20-seq-resource-container.scm (covid19-pubseq-configuration): Use it by default. | |||
| 2022-09-14 | Rename genenetwork 1 container file to genenetwork1.scm. | Arun Isaac | |
| 2022-08-29 | Do not require networking for virtuoso shepherd-service. | Arun Isaac | |
| * gn/services/databases.scm (virtuoso-shepherd-service)[requirement]: Delete. | |||
| 2022-08-22 | Set permissions on virtuoso state directory. | Arun Isaac | |
| * gn/services/databases.scm (virtuoso-activation): New function. (virtuoso-service-type): Extend activation-service-type with virtuoso-activation. | |||
| 2022-08-20 | Log messages from virtuoso service. | Arun Isaac | |
| 2022-05-05 | services: databases: Add virtuoso maximum dirty buffers configuration. | Arun Isaac | |
| * gn/services/databases.scm (<virtuoso-configuration>)[maximum-dirty-buffers]: New field. (virtuoso-shepherd-service): Serialize maximum-dirty-buffers field. | |||
| 2022-05-05 | services: databases: Add virtuoso number of buffers configuration. | Arun Isaac | |
| * gn/services/databases.scm (<virtuoso-configuration>)[number-of-buffers]: New field. (virtuoso-shepherd-service): Serialize number-of-buffers field. | |||
| 2022-03-10 | services: databases: Add virtuoso state directory configuration. | Arun Isaac | |
| * gn/services/databases.scm (<virtuoso-configuration>)[state-directory]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use state-directory. | |||
| 2022-03-10 | services: databases: Add virtuoso SQL server IP and port setting. | Arun Isaac | |
| * gn/services/databases.scm (<virtuoso-configuration>)[server-ip, server-port]: New fields. * gn/services/databases.scm (virtuoso-shepherd-service): Use server-ip and server-port. | |||
| 2022-03-10 | services: databases: Add virtuoso HTTP server configuration. | Arun Isaac | |
| * gn/services/databases.scm (<virtuoso-configuration>)[http-server-ip]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use http-server-ip. | |||
| 2022-03-10 | services: databases: Prefer (guix records) to define-configuration. | Arun Isaac | |
| define-configuration does too much magic. * gn/services/databases.scm (<virtuoso-configuration>): Redefine using (guix records). Export virtuoso-configuration?. (virtuoso-shepherd-service): Represent a disabled port with #f. | |||
| 2021-11-30 | gn: services: databases: Export virtuoso-service-type. | Arun Isaac | |
| * gn/services/databases.scm: Export virtuoso-service-type. | |||
| 2021-11-30 | gnu: services: Add virtuoso service. | Arun Isaac | |
| * gn/services/databases.scm: New file. | |||
| 2021-09-04 | Adjust to new multi-target bootloader configs | Efraim Flashner | |
| 2021-06-06 | genecup: update to 1.1. | Efraim Flashner | |
| 2021-05-27 | gn: genecup testing | Efraim Flashner | |
| 2021-05-25 | gn: visuals more progress | Efraim Flashner | |
| 2021-05-24 | gn: visuals webservice proof-of-concept | Efraim Flashner | |
| 2021-05-11 | gn: genome-browser: use database on penguin2 | Efraim Flashner | |
| 2021-05-04 | gn: genome browser tests good | Efraim Flashner | |
| 2021-04-30 | gn: genome-browser: update package, service | Efraim Flashner | |
| 2021-04-30 | gn: genome browser: nearly have the graph working. | Efraim Flashner | |
| 2021-04-26 | Merge branch 'discourse-ruby-packages' | Efraim Flashner | |
| 2021-04-25 | gn: ucsc genome browser: functioning web service? | Efraim Flashner | |
| 2021-04-22 | gn: Initial ucsc-genome-browser and service. | Efraim Flashner | |
| 2021-04-19 | gn: discourse packaging on holddiscourse-ruby-packages | Efraim Flashner | |
| 2021-04-19 | gn: move bnw service to port 8881 | Efraim Flashner | |
| 2021-03-16 | gn: bnw: updates | Efraim Flashner | |
| wrap run_scripts for octave invocations with coreutils adjust service | |||
| 2021-03-04 | gn: Update bnw to latest version. | Efraim Flashner | |
| Update bnw and the service | |||
| 2021-02-19 | mod_python session path fix | Pjotr Prins | |
| 2021-02-15 | gn1: port | Pjotr Prins | |
| 2021-02-15 | gn1: default | Pjotr Prins | |
| 2021-02-15 | gn1: parametrize | GN1 user | |
| 2021-02-05 | gn1: parametrize source so I can use a local dir | GN1 user | |
| 2021-02-05 | gn1: make run in a container | root | |
| 2021-02-05 | Move packages to genetwork1 propagated inputs | BonfaceKilz | |
| * gn/services/genenetwork.scm: Move some package defs to ... * gn/packages/genenetwork.scm [propagated-inputs]: ... here. | |||
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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