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2022-07-29gn: busco: Update to 5.4.1.Efraim Flashner
2022-07-29gnu: pplacer: Fix building.Efraim Flashner
* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable. (build-with-ocaml4.07): New procedure. * gn/packages/bioinformatics.scm (pplacer): Wrap with build-with-ocaml4.07.
2022-07-29gn: Add r-bracerEfraim Flashner
2022-07-22gn: Update gn-rust-correlationAlexander_Kabui
* gn/packages/crates-io.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-22gn: genenetwork2: Add gn-rust-correlation.Alexander_Kabui
* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add gn-rust-correlations. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-11gn: tissue: Update to 0.1.0-3.6d6285d.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-3.6d6285d. [inputs]: Add guile-filesystem.
2022-07-01gn: tissue: Update to 0.1.0-2.b15edb1.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-2.b15edb1.
2022-06-30gn: tissue: Update to 0.1.0-1.fd6668c.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-1.fd6668c.
2022-06-29gn: genenetwork3: Add gn-rust-correlation.BonfaceKilz
* gn/packages/genenetwork.scm: Import module crates-io. (genenetwork3) [propagated-inputs]: Add gn-rust-correlations.
2022-06-29gn: Add gn-rust-correlation.Alexander_Kabui
* gn/packages/crates-io.scm (gn-rust-correlation): New variable Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-06-29gn: Add rust-gsl.Alexander_Kabui
* gn/packages/crates-io.scm (rust-gsl): New variable. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-06-29gn: Add rust-gsl-sys.Alexander_Kabui
* gn/packages/crates-io.scm (rust-gsl-sys): New variable. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-06-29gn: tissue: Update to 0.1.0-0.2866d0c.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2866d0c.
2022-06-29gn: tissue: Update to 0.1.0-0.2ef55e6.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2ef55e6.
2022-06-29gn: gitea: Update to 1.15.11.Efraim Flashner
2022-06-29gn: tissue: Update to 0.1.0-0.983fc85.Arun Isaac
* gn/packages/gemini.scm: Do not import (gnu packages version-control). Import (gnu packages guile-xyz) and (guix gexp). (tissue): Update to 0.1.0-0.983fc85.
2022-06-21gn: genenetwork2: Update itBonfaceKilz
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash.
2022-06-21gn: Update genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Remove python-ipfshttpclient.
2022-06-21gn: Add quast.Efraim Flashner
2022-06-21gn: metaeuk: Fix building package.Efraim Flashner
2022-06-14gn: genenetwork3: Use upstream python-pingouin.Arun Isaac
* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): Delete variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin-with-working-python-seaborn with upstream python-pingouin.
2022-06-10gn: Update genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Add python-lmdb.
2022-06-07gn: hap.py: Add previously missing inputs.Efraim Flashner
2022-06-07gn: Fix building python2-bx-python.Efraim Flashner
2022-06-07gn: pplacer-scripts: Update argument field.Efraim Flashner
2022-06-07gn: python2-biopython: Fix building package.Efraim Flashner
2022-06-07gn: Fix building python2-rpy2.Efraim Flashner
2022-06-07gn: Hide inputs which have been dropped by Guix.Efraim Flashner
2022-06-07gn: Add missing module importsEfraim Flashner
2022-06-07gn: cleanup yaj importsEfraim Flashner
2022-06-01gn: Add python2-biopython.Arun Isaac
python2-biopython has been removed from Guix upstream. * gn/packages/bioinformatics.scm (python2-biopython): New variable.
2022-06-01gn: bioinformatics: Import (gnu packages ocaml).Arun Isaac
* gn/packages/bioinformatics.scm: Import (gnu packages ocaml) required by dependencies of pplacer.
2022-06-01gnu: Add pplacer.Arun Isaac
pplacer and pplacer-scripts have been removed from Guix upstream. * gn/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables.
2022-06-01gnu: Add python-pytest-runner-2.Arun Isaac
python-pytest-runner-2 has been removed from Guix upstream. * gn/packages/bioinformatics.scm (python-pytest-runner-2): New variable.
2022-06-01gn: Adjust vg for other architecturesEfraim Flashner
2022-06-01ruby-cbor upstreamedEfraim Flashner
2022-05-24New dependency: (genenetwork3: diffutils)Frederick Muriuki Muriithi
- Genenetwork3 depends on diffutils
2022-05-11genenetwork-qc: Update the releaseFrederick Muriuki Muriithi
2022-05-09Add definition for genenetwork-qcFrederick Muriuki Muriithi
Add a package definition for the GeneNetwork Quality Control application.
2022-05-03gn: cva6: Set #:make-flags instead of overriding the build phase.Arun Isaac
* gn/packages/riscv.scm (cva6)[arguments]: Set #:make-flags instead of overriding the build phase.
2022-05-03gn: cva6: Switch to upstream source instead of fork.Arun Isaac
* gn/packages/riscv.scm (cva6)[source]: Use upstream openhwgroup source instead of the cornell-brg fork. [arguments]: Add fix-stdout phase. Pass RISV=0 to make in build phase.
2022-05-02gn: cva6: Install executable as ariane.Arun Isaac
* gn/packages/riscv.scm (cva6)[arguments]: In the custom install phase, install executable as ariane instead of Variane_testharness.
2022-05-02gn: Add cva6.Arun Isaac
* gn/packages/riscv.scm: Import (gn packages fpga), (gnu packages virtualization), (guix build utils), (guix build-system gnu), (guix gexp) and (guix licenses). (cva6): New variable.
2022-05-02gn: Add verilator-4.110.Arun Isaac
* gn/packages/fpga.scm: New file.
2022-04-20Remove upstreamed packagesEfraim Flashner
2022-04-20gn: Add wfa2-lib-static.Efraim Flashner
2022-04-20gn: wfa2-lib: Install headers.Efraim Flashner
2022-04-20gn: skribilo-with-gemtext-reader: Update to 0.9.5-1.621eb19.Arun Isaac
* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Rename to skribilo-latest and switch to the latest commit on the master branch. (tissue)[propagated-inputs]: Replace skribilo-with-gemtext-reader with skribilo-latest.
2022-04-19gn: Add wfa2-lib.Efraim Flashner
2022-04-15gn: tissue: Set absolute path to guile, not git, in shebang.Arun Isaac
* gn/packages/gemini.scm (tissue)[arguments]: In the custom patch-source-shebangs phase, set the absolute path to guile, not git, in the shebang.
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