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4 daysGenenetwork2: Upgrade to commit f0daa14. HEAD masterFrederick Muriuki Muriithi
6 daysGenenetwork2: Upgrade to commit b3f5580.Frederick Muriuki Muriithi
11 daysGenenetwork2: Upgrade to commit 3afc2ee.Frederick Muriuki Muriithi
11 daysGenenetwork2: Upgrade to commit 24ee4c1.Frederick Muriuki Muriithi
12 daysRemove phase: bin/genenetwork2 script no longer exists.Frederick Muriuki Muriithi
13 daysgn-uploader: Upgrade to commit ea7d74d.Frederick Muriuki Muriithi
13 daysgn-uploader: upgrade to commit c2b9306.Frederick Muriuki Muriithi
2025-10-06genenetwork2: upgrade to commit e00d5ad.Frederick Muriuki Muriithi
2025-10-06genenetwork2: upgrade to commit 7add12a.Frederick Muriuki Muriithi
2025-10-06genenetwork3: Upgrade to commit d24ffc9.Frederick Muriuki Muriithi
2025-10-06gn-auth: Upgrade to commit 9839e5b.Frederick Muriuki Muriithi
2025-10-06python2-six: import from (past packages python27)Frederick Muriuki Muriithi
python2-six was deleted on mainline guix and moved to guix-past.
2025-10-06python-unittest2: Copy deleted package over from guix mainlineFrederick Muriuki Muriithi
Certain packages in guix-bioinformatics have `python-unittest2` as a dependency, but the package was deleted from guix mainline. This commit copies the deleted package definition over to guix-bioinformatics and includes the module where the package is used.
2025-10-06python-nosexcover: Copy deleted package from mainline guixFrederick Muriuki Muriithi
Copy over the package deleted in mainline guix over to guix-bioinformatics.
2025-10-06Upgrade dependency version: llvm 6 -> 12.Frederick Muriuki Muriithi
2025-10-06Replace modules with the (past-crates packages crates-io) moduleFrederick Muriuki Muriithi
Replace the following rust modules with the (past-crates packages crates-io) where all the older rust packages were moved: * #:use-module (gnu packages crates-io) * #:use-module (gnu packages crates-check) * #:use-module (gnu packages crates-windows) * #:use-module (gnu packages crates-graphics) * #:use-module (gnu packages crates-compression)
2025-10-06Remove obsolete dependenciesFrederick Muriuki Muriithi
* python-pytest-cache: integrated into core python-pytest
2025-10-06Replace tensorflow with tensorflow-lite.Frederick Muriuki Muriithi
The package `tensorflow` no longer exists on mainline guix, and it seems to have been replaced by `tensorflow-lite`. This commit updates the packages with `tensorflow` as a dependency to instead depend on `tensorflow-lite`.
2025-10-03Replace (gnu packages fpga) with (gnu packages electronics).Frederick Muriuki Muriithi
2025-10-03python2-six no longer exists upstream: remove it.Frederick Muriuki Muriithi
2025-10-01genenetwork2: Upgrade to commit 6f7a6a2.Frederick Muriuki Muriithi
2025-10-01genenetwork3: Upgrade to commit 082d585.Frederick Muriuki Muriithi
2025-10-01gn-guile: Upgrade to commit 454244b.Frederick Muriuki Muriithi
2025-09-05genenetwork3: Add r-thor to genenetwork3.Alexander_Kabui
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-thor. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-09-05gn: Add r-thor.Alexander_Kabui
* gn/packages/statistics.scm (r-thor): New variable. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-09-03gn: Add julia-jwas.Arun Isaac
* gn/packages/julia.scm (julia-jwas): New variable.
2025-09-03gn: Add julia-progressmeter.Arun Isaac
* gn/packages/julia.scm (julia-progressmeter): New variable.
2025-09-03gn: Add r-genio.Arun Isaac
* gn/packages/bioinformatics.scm (r-genio): New variable.
2025-09-03Add ruby-rdf-raptorpjotrp
2025-09-02ruby-rdf-raptor: new variablepjotrp
2025-09-01ruby-rdf: New variable with dependenciespjotrp
This is to add Ruby-RDF. Note that these are completely untested at this point.
2025-08-28genenetwork2: update to commit 2881fd0.Frederick Muriuki Muriithi
2025-08-28gn-uploader: Update to commit c348539.Frederick Muriuki Muriithi
2025-08-27gn-auth: Upgrade to commit 33418d9.Frederick Muriuki Muriithi
2025-08-26gn-uploader: Upgrade to commit 819e5b3.Frederick Muriuki Muriithi
2025-08-22gn: javascript-marked-highlight: Install marked-highlight.js. * ↵Alexander_Kabui
gn/packages/javascript.scm (javascript-marked-highlight): Rename built file to marked-highlight.js and install it under share/genenetwork2/javascript/marked.
2025-08-22gn: genenetwork2: Install xterm js and css under xterm dir. * ↵Alexander_Kabui
gn/packages/javacript.scm (javascript-xterm): Install xterm files to share/genenetwork2/javascript/xterm. * gn/packages/javacript.scm (javascript-xterm-style): Install xterm files to "share/genenetwork2/javascript/xterm.
2025-08-21genenetwork2: Upgrade to commit eecad67.Frederick Muriuki Muriithi
2025-08-21genenetwork2: Upgrade to commit 07f9273.Frederick Muriuki Muriithi
2025-08-21genenetwork2: Upgrade to commit 5bb1bea.Frederick Muriuki Muriithi
2025-08-21javascript-xterm-style: Fix buildFrederick Muriuki Muriithi
* Use archive from NPM registry rather than minified file from CDN * Modify phases to fix minor build issues.
2025-08-21javascript-xterm: Update buildFrederick Muriuki Muriithi
* Fetch archive from NPM registry rather than from CDN * Copy minified files directly to store
2025-08-21javascript-marked-highlight: Use raw files and minify them ourselvesFrederick Muriuki Muriithi
* Relying on pre-minified files leads to changes in the hash value if the files are reprocessed by the CDN.
2025-08-20gn-uploader: Upgrade to commit f98d99b.Frederick Muriuki Muriithi
2025-08-18Update the module from which nss-certs is imported.Frederick Muriuki Muriithi
2025-08-16ruby-lmdb: upgradepjotrp
2025-08-15gn-guile: Update to commit 289da2e.Frederick Muriuki Muriithi
2025-08-14Use newer version of python-mysqlclient.Frederick Muriuki Muriithi
2025-08-13python-mysqlclient-2.2.7: Define a newer version of mysqlclientFrederick Muriuki Muriithi
2025-08-13genenetwork3: upgrade to commit f9b6548.Frederick Muriuki Muriithi
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-10-26 11:41:50 +0000