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2023-03-22Add python-pyshexc-0.7.Efraim Flashner
* gn/packages/python.scm (python-pyshexc-0.7): New variable.
2023-03-22Add python-pytest-5.Efraim Flashner
* gn/packages/python.scm (python-pytest-5): New variable.
2023-03-20python-arvados-python-client: Update to 2.5.0.Efraim Flashner
* gn/packages/python.scm (python-arvados-python-client): Update to 2.5.0. [source]: Add snippet to not limit the maximum version of pycurl. [propagated-inputs]: Add python-google-api-core-1, python-google-auth-1, python-protobuf, python-pyparsing-2.4.7, python-ruamel.yaml. Remove python38-ruaml.yaml-0.15.76, python-setuptools, python-oauth2client, python-uritemplate. (python38-ruaml.yaml-0.15.76): Remove variable.
2023-03-20python-shexjsg: Update to 0.8.2.Efraim Flashner
* gn/packages/python.scm (python-shexjsg): Update to 0.8.2. [arguments]: Remove custom 'patch-source phase. Update custom 'check phase. [propagated-inputs]: Remove python-antlr4-python3-runtime, python-certifi, python-chardet, python-idna, python-isodate, python-requests, python-urllib3. [native-inputs]: Add python-rdflib-shim, python-requests. Remove python-pyparsing, python-pyshexc, python-rdflib, python-rdflib-jsonld, python-six, custom test-suite git checkout.
2023-03-20Add python-sparqlslurper.Efraim Flashner
* gn/packages/python.scm (python-sparqlslurper): New variable.
2023-03-20Add python-rdflib-shim.Efraim Flashner
* gn/packages/python.scm (python-rdflib-shim): New variable. (python-rdflib-jsonld-0.6.1): New variable.
2023-03-20python-pyshex: Update to 0.8.1.Efraim Flashner
* gn/packages/python.scm (python-pyshex): Update to 0.8.1. [arguments]: Remove custom 'patch-source phase. Update custom 'check phase. [propagated-inputs]: Add python-chardet, python-rdflib-shim, python-sparqlslurper. Remove python-rdflib, python-rdflib-jsonld, python-pbr, python-sparql-slurper. [native-inputs]: Add python-pbr, python-unitttest2.
2023-03-20python-pyshexc: Update to 0.9.1.Efraim Flashner
* gn/packages/python.scm (python-pyshexc): Update to 0.9.1. [arguments]: Update custom 'check phase. [propagated-inputs]: Add python-chardet, python-rdflib-shim, python-shexjsg. Remove python-rdflib, python-rdflib-jsonld, python-requests. [native-inputs]: Add python-pbr, python-requests. Remove python-shexjsg, custom test-suite git checkout. (python-shexjsg-min): Remove variable.
2023-03-19python-pyjsg: Update to 0.11.10.Efraim Flashner
* gn/packages/python.scm (python-pyjsg): Update to 0.11.10. [arguments]: Remove 'patch-source phase. Skip 1 set of tests in custom 'check phase. [propagated-inputs]: Move python-requests ... [native-inputs]: ... to here. Add python-unittest2. Remove test-suite checkout.
2023-03-19python-antlr4-python3-runtime: Update to 4.9.3.Efraim Flashner
* gn/packages/python.scm (python-antlr4-python3-runtime): Update to 4.9.3.
2023-03-19python-pytest-4: Add missing input.Efraim Flashner
* gn/packages/python.scm (python-pytest-4)[native-inputs]: Add python-atomicwrites.
2023-03-19updates to julia packagesEfraim Flashner
2023-03-08gn: genenetwork3: Add python-argon-cffiFrederick Muriuki Muriithi
As part of improving the security of passwords, this commit adds python-argon-cffi that enables use of the better Argon2 password hashing algorithm, rather than the dated bcrypt that is a tad vulnerable to offline cracking.
2023-03-02genenetwork3: New dependency (python-email-validator)Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm: (python-email-validator): New dependency
2023-01-27gn: tissue: Update to 0.1.0.Arun Isaac
* gn/packages/gemini.scm: Import (gnu packages compression) and (guix download). (tissue): Update to 0.1.0. [source]: Use url-fetch. [native-inputs]: Add lzip.
2023-01-22genecup: Update to 1.8.Efraim Flashner
2023-01-20gn: tissue: Use latest guile-xapian.Arun Isaac
* gn/packages/gemini.scm (guile-xapian-latest): New variable. (tissue): Use guile-xapian-latest.
2023-01-12gn: genecup: Update to 1.7.Efraim Flashner
2022-12-28gn: (genenetwork2): Add python-authlib as a dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm: (python-authlib): New dependency
2022-12-28gn: (genenetwork2): Add flask-session as a dependencyFrederick Muriuki Muriithi
Flask session already handles a lot of the house-keeping involved with server-side sessions: this commit adds it as a dependency to avoid having to do the house-keeping manually. * gn/packages/genenetwork.scm: (python-flask-session): New dependency
2022-12-23Disable pingouin testsPjotr Prins
2022-12-23Making the build work for genenetworkPjotr Prins
2022-12-20gn: (genenetwork3): Add dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Add python-authlib as a dependency to genenetwork3
2022-12-16gn: (python-authlib): New packageFrederick Muriuki Muriithi
* gn/packages/python-web.scm: (python-authlib): New package.
2022-12-11gn: Fix building genenetwork1Efraim Flashner
2022-12-11Revert "gn: rust-quick-csv-0.1: remove duplicated package"Efraim Flashner
This reverts commit fb631515ccf985e6e89c6cb03a86833aa3b963c6. rust-quick-csv-0.1 isn't actually in Guix yet.
2022-12-08Minor fixes aiming for genenetwork1Pjotr Prins
2022-12-06gn: (rust-clap-4): Update dependencyFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (rust-clap-4): Change from rust-terminal-size-0.2 which is undefined to rust-terminal-size-0.1
2022-12-06gn: (julia-visuals): Slurp expressions to fix package definitionFrederick Muriuki Muriithi
* gn/packages/julia.scm (julia-visuals): slurp in sexps to fix the package definition.
2022-12-06gn: rust-quick-csv-0.1: remove duplicated packageFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (rust-quick-csv-0.1): Remove package that is also defined in mainline guix
2022-12-06gn: (genenetwork3): Update to 0.1.0-2.e781996Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to version 0.1.0-2.e781996
2022-12-05Commented Julia inputs that no longer workpjotrp
2022-12-04gn: Replace IPFS links in python24 and python with GN file serverPjotr Prins
2022-11-30gn: Remove upstreamed packagesEfraim Flashner
2022-11-29gn: (gn-rust-correlation): Update to 0.1.4-0.a22381eAlexanderKabui
* gn/packages/crates-io.scm (gn-rust-correlation): 0.1.4--0.a22381e
2022-11-27gn: Fix guix pull.Efraim Flashner
2022-11-16gn: Add graph-genotyper and dependent packagesEfraim Flashner
2022-11-13gn: pgr-tk: Unbundle agc.Efraim Flashner
2022-11-10gn: Add missing imports and package licenses.Efraim Flashner
2022-11-10gn: Add pgr-tkEfraim Flashner
2022-11-07gn: Add missing crateEfraim Flashner
2022-11-03gn: (gn/packages/genenetwork.scm): Add yoyo-migrations as dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm: add yoyo-migrations as a dependency.
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings.Arun Isaac
Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings.
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739
2022-10-24gn: Fix ruby module licensesEfraim Flashner
2022-10-24gn: Update crates for upstream changesEfraim Flashner
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings.
2022-10-18gn: genenetwork3: Depend on python-pymonad.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad.
2022-10-18gn: genenetwork3: Depend on python-click.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click.
2022-10-11gn: (gn-rust-correlation): Update to 0.1.4-0.b82a93bFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation): 0.1.4-0.b82a93b
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-27 05:40:56 +0000