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2019-08-04bnw: Build binaries.Efraim Flashner
* gn/packages/bnw.scm (bnw)[build-system]: Use gnu-build-system. [arguments]: Adjust accordingly. [native-inputs]: Remove source. [inputs]: Remove bash-minimal, add rmath-standalone.
2019-08-01Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticsPjotr Prins
2019-07-30minor rust updatesEfraim Flashner
2019-07-30gn: minor rust updatesEfraim Flashner
2019-07-29gn: python-shellescape: Clean up package definition.Efraim Flashner
* gn/packages/python.scm (python-shellescape): Re-indent. [source]: Use pypi uri. [inputs]: Move python-setuptools ... [native-inputs]: ... to here. [license]: Use 'license' prefix.
2019-07-29gn: python-subprocess32: Correctly mark as version 3.5.3.Efraim Flashner
* gn/packages/python.scm (python-subprocess32): Re-indent. [version]: Correct to 3.5.3, which is what the source was downloading. [source]: Use pypi uri.
2019-07-29gn: python-typing-extensions: Clean up package definition.Efraim Flashner
* gn/packages/python.scm (python-typing-extensions): Re-indent. [source]: Use pypi uri.
2019-07-29gn: python-bagit: Clean up package definition.Efraim Flashner
* gn/packages/python.scm (python-bagit)[source]: Use pypi uri. [synopsis, description]: Update.
2019-07-29gn: Add rust-qtlreaper and dependencies.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper): New variable. * gn/packages/crates-io.scm (~300 packages): New variables.
2019-07-22gn: bnw: Add javascript libraries.Efraim Flashner
* gn/packages/bnw.scm (bnw)[inputs]: Add web-jquery, web-font-awesome, javascript-cytoscape, javascript-cytoscape-2, javascript-dagre, javascript-lodash, javascript-cytoscape-dagre, javascript-cytoscape-panzoom, javascript-d3js-4, javascript-d3js-multi, javascript-canvas-toblob, javascript-filesaver. [arguments]: Add references to new inputs.
2019-07-22gn: Add javascript-filesaver.Efraim Flashner
* gn/packages/javascript.scm (javascript-filesaver): New variable.
2019-07-22gn: Add javascript-canvas-toblob.Efraim Flashner
* gn/packages/javascript.scm (javascript-canvas-toblob): New variable.
2019-07-22gn: Add javascript-d3js-multi.Efraim Flashner
* gn/packages/javascript.scm (javascript-d3js-multi): New variable.
2019-07-22gn: Add javascript-d3js-4.Efraim Flashner
* gn/packages/javascript.scm (javascript-d3js-4): New variable.
2019-07-22gn: Add javascript-d3js.Efraim Flashner
* gn/packages/javascript.scm (javascript-d3js): New variable.
2019-07-22gn: Add javascript-lodash.Efraim Flashner
* gn/packages/javascrpt.scm (javascript-lodash): New variable.
2019-07-22gn: Add font-awesome.Efraim Flashner
* gn/packages/web.scm (font-awesome): New variable.
2019-07-22gn: Add javascript-cytoscape-dagre.Efraim Flashner
* gn/packages/javascript.scm (javascript-cytoscape-dagre): New variable.
2019-07-22gn: Add javascript-dagre.Efraim Flashner
* gn/packages/javascript.scm (javascript-dagre): New variable.
2019-07-22gn: bnw: Patch '/usr/bin/dot' references.Efraim Flashner
* gn/packages/bnw.scm (bnw): Add substitute* to patch '/usr/bin/dot' calls with store graphviz references.
2019-07-21gn: Add javascript-cytoscape-popper.Efraim Flashner
* gn/packages/web.scm (javascript-cytoscape-popper): New variable.
2019-07-21gn: Add javascript-qtip2.Efraim Flashner
* gn/packages/javascript.scm (javascript-qtip2): New variable.
2019-07-21gn: web-bootstrap-native: Clean up package.Efraim Flashner
* gn/packages/web.scm (web-bootstrap-native): Re-indent. [arguments]: Clean up build.
2019-07-21gn: web-bootstrap: Update to 4.3.1.Efraim Flashner
* gn/packages/web.scm (web-bootstrap): Update to 4.3.1.
2019-07-21gn: web-bootstrap: Clean up package.Efraim Flashner
* gn/packages/web.scm (web-bootstrap)[source]: Download using 'git-fetch'. [native-inputs]: Remove unzip. [arguments]: Adjust accordingly. [home-page]: Use https.
2019-07-21gn: web-jquery: Update to 3.4.1.Efraim Flashner
* gn/packages/web.scm (web-jquery): Update to 3.4.1.
2019-07-21gn: web-jquery: Clean up package.Efraim Flashner
* gn/packages/web.scm (web-jquery)[source]: Download with 'git-fetch'. [native-inputs]: Remove unzip. [arguments]: Adjust accordingly. [home-page]: Use https. [synopsis]: Update synopsis. [description]: Flesh out description.
2019-07-21gn: javascript-datatables: Update to 1.10.19.Efraim Flashner
* gn/packages/javascript.scm (javascript-datatables): Update to 1.10.19. [source]: Download using git-fetch. [native-inputs]: Remove gzip, tar. [inputs]: Move javascript-cytoscape ... [propagated-inputs]: ... to here. [arguments]: Adjust accordingly. [home-page]; Update home-page. [synopsis]: Update synopsis. [description]: Flesh out description.
2019-07-21gn: javascript-cytoscape-qtip: Clean up definition.Efraim Flashner
* gn/packages/javascript.scm (javascript-cytoscape-qtip)[source]: Download using 'git-fetch'. [native-inputs]: Remove gzip, tar. [arguments]: Adjust build accordingly. [synopsis]: Update synopsis.
2019-07-21gn: javascript-cytoscape-panzoom: Update to 2.5.3.Efraim Flashner
* gn/packages/javascript.scm (javascript-cytoscape-panzoom): Update to 2.5.3. [source]: Download with git-fetch. [native-inputs]: Remove gzip, tar. [arguments]: Adjust build accordingly. [home-page]: Update home-page. [synopsis]: Update synopsis. [description]: Flesh out description.
2019-07-21gn: Add javascript-cytoscape-2.Efraim Flashner
* gn/packages/javascript.scm (javascript-cytoscape-2): New variable.
2019-07-21gn: javascript-cytoscape: Update to 3.8.1.Efraim Flashner
* gn/packages/javascript.scm (javascript-cytoscape): Update to 3.8.1. [source]: Download using git-fetch. [native-inputs]: Remove gzip, tar. [arguments]: Change build script accordingly. [home-page]: Update home-page. [synopsis]: Update synopsis. [description]: Flesh out description.
2019-07-21gn: javascript-twitter-post-fetcher: Update to 18.0.2-1.8f9e667.Efraim Flashner
* gn/packages/javascript.scm (javascript-twitter-post-fetcher): Update to 18.0.2-1.8f9e667. [version]: Use 'git-version'. [arguments]: Simply build phase. [description]: Update description.
2019-07-19gn: Add BNW.Efraim Flashner
* gn/packages/bnw.scm (bnw): New variable.
2019-07-14gn: Add python2 versions of GN1 thirdparty packages.Efraim Flashner
2019-07-14gn: Add python2-piddle-1.0.15.Efraim Flashner
* gn/packages/python.scm (python2-piddle-1.0.15): New variable. * gn/packages/python24.scm (python24-piddle): Inherit from python2-piddle-1.0.15.
2019-07-14gn: python24-pil: Inherit from python2-pil1.Efraim Flashner
* gn/packages/python24.scm (python24-pil): Inherit from python2-pil1.
2019-07-14python2-pil1: Update to 1.1.7.Efraim Flashner
* gn/packages/python.scm (python2-pil1): Update to 1.1.7. [source]: Use upstream source. Update source snippet. [inputs]: Add lcms, tcl. Remove python2-setuptools. [arguments]: Build without setuptools. Update custom 'link-libraries phase. [description]: Update.
2019-07-09gn: Add mod-python.Efraim Flashner
* gn/packages/web.scm (mod-python): New variable.
2019-07-09gn: suitesparse-3.5.0: Build with metis.Efraim Flashner
2019-07-09gn: suitesparse-3.5.0: Build with -fPIC.Efraim Flashner
2019-07-08gn: Add suitesparse-3.5.0.Efraim Flashner
2019-07-04gn: python24: build without setuptools when possibleEfraim Flashner
2019-07-04gn: Add GN1 thirdparty packages.Efraim Flashner
2019-07-04gn: Add python24-qtlreaper.Efraim Flashner
2019-07-02gn: Octave@3.4.3: Build with glibc-2.28.Efraim Flashner
[inputs]: Add newer fseeko.c from gnulib, remove glibc-2.27. [arguments]: Copy newer fseeko.c into place after unpacking.
2019-07-02gn: Add python-plotly-3.2.1.Efraim Flashner
Add dependant library python-retrying.
2019-07-02gn: Add graphviz@2.26Efraim Flashner
2019-07-01gn: Add octave@3.4.3.Efraim Flashner
Add two upstream patches and package glpk@4.48 for octave to use.
2019-06-28gn: Add python24-pp.Efraim Flashner
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-16 13:32:05 +0000