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AgeCommit message (Collapse)Author
2021-08-29work on packaging bazelEfraim Flashner
2021-08-28Moved packages into past/genenetwork1 and packages/pangenome to reduce chance ofpjotrp
breaking the main genenetwork packages.
2021-08-28Remove golang module loaderpjotrp
2021-08-24genenetwork[23]: updated git checkout and commented out DAG generationPjotr Prins
2021-08-24Removed tls warningPjotr Prins
2021-08-24Removed tls to remove warningsPjotr Prins
2021-08-22gemma: bump to 0.98.5-prepjotrp
2021-08-22gemma-wrapper: update to 0.99.3pjotrp
2021-08-20gn: Add missing importEfraim Flashner
2021-08-19gn: make sure we use the correct rust versionEfraim Flashner
2021-08-18Remove csv-diff from channel.BonfaceKilz
This is already packaged upstream. * gn/packages/genenetwork.scm: Remove "(gn packages golang)" import. * gn/packages/golang.scm: Delete file.
2021-08-16gn: Add toolbar overlay for debugging genenetwork2BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-flask-debugtoolbar
2021-08-16gn: Add python-flask-debugtoolbar.BonfaceKilz
* gn/packages/python.scm (python-flask-debugtoolbar): New variable.
2021-08-16gn: start moving calculated files to build separatelyEfraim Flashner
2021-08-16openssl-1.0 deprecated upstream, moved to guix-pastEfraim Flashner
2021-08-15gn: genenetwork2: Don't hardcode python version.Efraim Flashner
2021-08-12gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"BonfaceKilz
This fixes this error: guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
2021-08-12gn: Update gitea to 1.14.6.Efraim Flashner
2021-08-11gn: fix genenetwork2 package definitionEfraim Flashner
2021-08-11gn: Add pirs.Efraim Flashner
2021-08-11gn: Add pbsim2.Efraim Flashner
2021-08-11gn: Add pangenie.Efraim Flashner
2021-08-11fixup genenetwork2Efraim Flashner
2021-08-09gn: Adjust genenetwork2 for removal of python2-genenetwork2Efraim Flashner
2021-08-07gemma.scm: muck out old stuffpjotrp
2021-08-07python2-genenetwork2: remove unused Python2 version of genenetworkpjotrp
2021-08-07shunit2: rename to shunit2-old, so as not to conflict with upstreampjotrp
2021-08-05gn: Update genenetwork3 to 0.0.1-guix-487e50eBonfaceKilz
2021-08-04gn: Upstream some rust cratesEfraim Flashner
2021-08-03gn: genenetwork3: Add csvdiff as a propagated inputBonfaceKilz
2021-08-02clarify that this is an old seqwishErik Garrison
2021-08-02gn: gfaffix: Don't hardcode rust-handlegraph package versionEfraim Flashner
2021-08-02gn: rust-handlegraph-0.7: Update to 0.7.0-alpha.9.Efraim Flashner
2021-08-02actually update handlegraphErik Garrison
2021-08-02get bugfix in rs-handlegraphErik Garrison
2021-08-02gn: code updatesEfraim Flashner
2021-08-02gn: Add gfaffix.Efraim Flashner
2021-08-01code updatesEfraim Flashner
2021-08-01gn: Adjust python-whatshap for upstream changesEfraim Flashner
2021-07-31ldc: build is fine; tests failpjotrp
2021-07-21gn: Add python-whatshapEfraim Flashner
2021-07-20gn: golang: Add csv fast diffing toolBonfaceKilz
2021-07-15gn: Provide rtg.cfg for rtg-tools.Efraim Flashner
2021-07-12gn: Add ccwl.Efraim Flashner
* gn/packages/ccwl.scm (ccwl): New variable.
2021-07-12gn: Update genenetwork3 to 0.0.1-guix-7d22039BonfaceKilz
2021-07-11gn: Add rtg-toolsEfraim Flashner
* gn/packages/java.scm (rtg-tools): New variable. * gn/packages/bioinformatics (hap.py)[native-inputs]: Remove field. [inputs]: Add rtg-tools. [arguments]: Replace rtg-tools implementation.
2021-07-11gn: Add python24-direct.Efraim Flashner
* gn/packages/python24.scm (python24-direct): New variable. * gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add python24-direct.
2021-07-11gemma-wrapper: update to 0.99.1Pjotr Prins
2021-07-11gemma-wrapper: add GNU parallelPjotr Prins
2021-07-11Added GNU parallel to genenetwork2pjotrp
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-27 03:26:59 +0000