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2019-11-25gn: seqwish: Link against dynamic sdsl-lite library.Efraim Flashner
2019-11-25gn: boost-static: Upstreamed.Efraim Flashner
* gn/packages/boost.scm (boost-static): Remove variable.
2019-11-25gn: gitea: Update to 1.9.6.Efraim Flashner
2019-11-25gn: Remove sdsl-lite-gn.Efraim Flashner
We can use libdivsufsort from (gnu packages bioinformatics). * gn/packages/bioinformatics.scm (sdsl-lite-gn): Remove variable. (seqwish, graphaligner)[inputs]: Remove sdsl-lite-gn. Add sdsl-lite, libdivsufsort. [arguments]: Adjust for change in inputs.
2019-11-24gn: Add graphaligner, mummer.Efraim Flashner
* gn/packages/bioinformatics.scm (graphaligner, mummer): New variables.
2019-11-24gn: Add boost-static.Efraim Flashner
* gn/packages/boost.scm (boost-static): New variable.
2019-11-21gn: rn6-assembly-error-app: Use pngs from static location.Efraim Flashner
* gn/packages/bioinformatics.scm (rn6-assembly-error-app): Search for pngs in gn-rshiny'S $HOME rather than in /gnu/store.
2019-11-19gn: Add seqwish.Efraim Flashner
2019-11-18gn: Mailman updates with thanks to Florian Pelz.Efraim Flashner
2019-11-18gn: Follow upstream on package naming.Efraim Flashner
* gn/packages/mailman.scm: Rename packages from python-foo.bar to python-foo-bar.
2019-11-17gn: helm: Update to 3.0.0.Efraim Flashner
2019-11-14gn: Add kubernetes,crictl 1.13Efraim Flashner
2019-11-14gn: Add kubernetes, crictl 1.14Efraim Flashner
2019-11-14gn: Update kubernetes versionsEfraim Flashner
2019-11-12gn: Build crictl from source.Efraim Flashner
2019-11-12gn: Add kubernetes-1.15Efraim Flashner
2019-11-12gn: kubernetes: propagate crictl.Efraim Flashner
* gn/packages/kubernetes.scm (kubernetes)[propagated-inputs]: Add crictl.
2019-11-11gn: Add crictlEfraim Flashner
2019-11-11gn: helm: Update to 2.16.0.Efraim Flashner
2019-11-10gn: mailman: Use upstream python-zope-eventEfraim Flashner
2019-11-10gn: Add python-jupyter-repo2dockerEfraim Flashner
2019-11-10gn: Add minikube.Efraim Flashner
2019-11-10gn: Update dependencies for rust-qtlreaper.Efraim Flashner
* gn/packages/crates.io.scm (rust-arrayvec-0.4): Update to 0.4.12. (rust-either-1.5): Update to 1.5.3. (rust-unicode-segmentation-1.6): New variable. * gn/packages/genenetwork.scm (rust-qtlreaper)[inputs]: Remove rust-unicode-segmentation-1.3, add rust-unicode-segmentation-1.6.
2019-11-06gn: Add traefikEfraim Flashner
2019-11-06gn: Add jupyterhub, the-littlest-jupyterhubEfraim Flashner
2019-11-06gn: Add helm.Efraim Flashner
2019-11-06gn: Add kubernetes.Efraim Flashner
2019-11-05gn: Fix lint issues in (gn packages mailman).Efraim Flashner
2019-10-31gn: Package postorius-1.3 and dependents.Efraim Flashner
2019-10-30gn: Add python-mailman-hyperkitty, python-hyperkitty, python-django-mailman3Efraim Flashner
2019-10-29gn: Add mailman.Efraim Flashner
* gn/packages/mailman.scm (mailman): Add mailman and its dependants
2019-10-29gn: Add gitea and service.Efraim Flashner
* gn/packages/gitea.scm (gita): New variable. * gn/services/gitea-container.scm: New container. * gn/services/gitea.service: Add systemd service.
2019-10-28gn: rust-qtlreaper: Disable tests.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Disable tests. Add custom phase to update the expected test results with the new library versions.
2019-10-27gn: Adjust to upstream crate changes.Efraim Flashner
* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data.
2019-10-25gn: bnw: Update to 1.22-3.eb6b002.Efraim Flashner
* gn/packages/bnw.scm (bnw): Update to 1.22-3.eb6b002. Serve from bnw-test first.
2019-10-25gn: bnw: Unconditionally browse from the local directory.Efraim Flashner
* gn/packages/bnw.scm (bnw)[arguments]: Add to custom 'patch-source phase a workaround to always browse the website from the originating url.
2019-10-24gn: Update bnw to 1.22-2.eb6b002.Efraim Flashner
* gn/packages/bnw.scm (bnw)[arguments]: Patch more files. [inputs]: Add python2-plotly-3.2.1.
2019-10-22gn: Add python2-plotly-3.2.1.Efraim Flashner
* gn/packages/python.scm (python2-plotly-3.2.1): New variable.
2019-10-22gn: python2.4: Skip another test.Efraim Flashner
* gn/packages/python24.scm (python2.4)[arguments]: Also skip the test_mhlib.py test.
2019-10-22gn: web-font-awesome: Update for upstream Guix changes.Efraim Flashner
* gn/packages/web.scm (web-font-awesome)[inherit]: New field, inherit from font-awesome. [arguments]: Rewrite for build-system and upstream changes. [version, source, build-system, native-inputs, home-page, synopsis, description, license]: Use inherited upstream values.
2019-10-20gn: Deprecate r-shiny-gn.Efraim Flashner
* gn/packages/r-shiny.scm (r-shiny-gn, js-strftime-0.9, js-es5-shim-2): Deprecate packages.
2019-10-18fixup repo for guix pullEfraim Flashner
* gn/packages/cwl.scm: GN's python-setuptools renamed to python-setuptools-old,re-enable import. * gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace search-bootstrap-binary with bootstrap-executable.
2019-10-18gn: rust-qtlreaper: Manually provide dependencies.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually provide all the crates needed to build the package. * gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all inputs for all crates.
2019-10-16gn: bxd-power-calculator-app: Provide alternate locations for csv file.Efraim Flashner
* gn/packages/bioinformatics.scm (bxd-power-calculator-app)[inputs]: Download csv datasets file from archive.org. Also note its location in IPFS should it become necessary later.
2019-10-16gn: bxd-power-calculator-app: Bind to port 3978.Efraim Flashner
2019-10-16gn: rn6-assembly-error-app: Create launcher script.Efraim Flashner
* gn/packages/bioinformatics.scm (rn6-assembly-error-app)[arguments]: Remove some library substitutions. Fix location of png directory. Create launcher script. [inputs]: Add r-minimal. Move r-ggplot2, r-shiny ... [propagated-inputs]: ... to here. Add r.
2019-10-16gn: Add bxd-power-calculator-app.Efraim Flashner
* gn/packages/bioinformatics.scm (bxd-power-calculator-app): New variable.
2019-10-10Merge remote-tracking branch 'origin/core-updates'Efraim Flashner
2019-10-07gn: Update and add some cratesEfraim Flashner
2019-10-07gn: Update some crates.Efraim Flashner
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