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2019-05-31Use module (gnu packages cran). Change to python2-htmlgenMuriithi Frederick Muriuki
* Use module (gnu packages cran) to get access to r-wgcna * Change the dependency to python2-htmlgen which is the newer package supporting both python2 and python3
2019-05-31Update the version of python-htmlgenMuriithi Frederick Muriuki
* Update the version of python-htmlgen to 1.2.2
2019-03-13Remove commentsMuriithi Frederick Muriuki
* Remove comments referring to python2-piddle and python2-pil1 dependencies.
2019-02-18Add (gnu packages python-xyz) module.Muriithi Frederick Muriuki
* To find definitions of some packages like python2-pillow and python2-setuptools, there was need to use the (gnu packages python-xyz) module. This commit imports that module.
2019-02-18Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticsMuriithi Frederick Muriuki
2019-01-24gn: Add new dependency.Muriithi Frederick Muriuki
* gn/packages/genenetwork2.scm (python-pillow): New dependency.
2019-01-21Use sqlite module.Muriithi Frederick Muriuki
2019-01-21Add moduleMuriithi Frederick Muriuki
* python2-eventlet moved to gnu/packages/python-xyz.scm
2019-01-21gn: Add dependencyMuriithi Frederick Muriuki
* gn/packages/edash (python-flask-cors): Add dependency to edash.
2019-01-21gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-flask-cors): New variable.
2019-01-18gn: Add python-schedule as dependencyMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-schedule): New dependency.
2019-01-02CWLcwl-talkpjotrp
2018-12-20Add glibc-locales as dependencyMuriithi Frederick Muriuki
* python-click is very specific about the locales, and since it is a dependency, ensure that the glibc-locales package is linked to, to prevent the locales from being removed on `guix gc` or when a user runs `guix package -u` on their main profile.
2018-12-20Comment out problematic packagesMuriithi Frederick Muriuki
* Comment out python-pygit2 which doesn't seem to be used, and fails to build. * Comment out python-ipython which might be needed (not sure), but fails to build.
2018-12-14Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticsMuriithi Frederick Muriuki
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-connexion): New variable.
2018-12-14gn: Fix bugsMuriithi Frederick Muriuki
* After updating guix, fix some bugs here and there leading to build issues.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-aiohttp-3.4.4): New variable.
2018-12-14gn: python-pytest-timeoutMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-pytest-timeout): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-async-timeout-3.0.1): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-swagger-ui-bundle): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-openapi-spec-validator): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-aiohttp-jinja2): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-pytest-aiohttp): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-testfixtures): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-clickclick): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-tests): New package.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-ujson): New package.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-python-version): New package.
2018-12-14CWL: fetching from git repo to get the latestpjotrp
2018-12-14CWL final packages - tests pass in principle (except for some networking)pjotrp
2018-12-12CWL buildsPjotr Prins
2018-12-12CWLPjotr Prins
2018-12-11CWL: updatingPjotr Prins
2018-12-03Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformaticsMuriithi Frederick Muriuki
2018-12-03gn: Add dependencyMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (python-pillow): Add new dependency
2018-11-28Add missing packageMuriithi Frederick Muriuki
* Add python-ipython to the list of propagated packages.
2018-11-20Update GN2 install and gemma-wrapperPjotr Prins
2018-11-03Add sqlitepjotrp
2018-10-16Updated gemma and openblasPjotr Prins
2018-10-14Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticspjotrp
2018-10-14ldc: use ldc from mainlinepjotrp
2018-09-24gn: New variables. New dependenciesMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-speaklater,python-flask-mail) New variables. * gn/packages/edash.scm (edash): Add dependencies.
2018-08-23Merge remote-tracking branch 'origin/master'Muriithi Frederick Muriuki
2018-08-23gn: Remove Dependency (python-mako)Muriithi Frederick Muriuki
* gn/packages/edash.scm (python-mako): Remove dependency.
2018-08-08Started on faster-lmm-dev packagepjotrp
2018-08-07gn: Add gunicorn as dependencyMuriithi Frederick Muriuki
* gn/packages/edash.scm (gunicorn): New dependency
2018-08-03Merge remote-tracking branch 'origin/master'Muriithi Frederick Muriuki
2018-07-15gn: New dependenciesMuriithi Frederick Muriuki
* gn/packages/edash.scm: (python-wrapper): New dependency * gn/packages/edash.scm: (python-mako): New dependency * gn/packages/edash.scm: (python-pytest): Test dependency
2018-07-14Update dependencies for building gemmapjotrp
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