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2016-05-19The latest and the greatest cl.scmgh-e9a93584/15/Brainiarc7/patch-3Dennis E. Mungai
Key changes: 1. Bumped up Arrayfire, Boost Compute, clFFT and clBLAS. 2. A working version of LLVM 3.8, clang 3.8 and clang-runtime (Thanks, Roel Janssen). 3. WIP: pocl. Last piece of the puzzle.
2016-05-11r-biocprocesscore has been updated.Dennis E. Mungai
This should fix the genenetwork2 build issue, as noted on IRC.
2016-04-10remove remarkspjotrp
2016-04-05Added bio-table and bio-vcf gemspjotrp
2016-04-05Merge pull request #12 from roelj/masterPjotr Prins
gn: Add sparql-query.
2016-04-04gn: Add sparql-query.Roel Janssen
* gn/packages/sparql-query.scm: New file.
2016-03-30Small fixes and removed package now in main linepjotrp
2016-03-30Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-24Elixir fix pathpjotrp
2016-03-24elixir: fix filenamepjotrp
2016-03-24Added elixirpjotrp
2016-03-24Updated erlang by Leopjotrp
2016-03-23This runs with gn-stablepjotrp
2016-03-23Mergepjotrp
2016-03-23Databasespjotrp
2016-03-23GN2 fixpjotrp
2016-03-23GN2 fixstablePjotr Prins
2016-03-23Fixed hashPjotr Prins
2016-03-23Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-23gn: Add 4store.Roel Janssen
* gn/packages/4store.scm (4store): New variable. * 4store-fix-buildsystem.patch: New file.
2016-03-22Fixed and added erlangdennisPjotr Prins
2016-03-20Add mongodb.Roel Janssen
This package was rejected upstream because it contains the sources of libraries that are also available as shared libraries.
2016-03-19Merge branch 'master' of github.com:Brainiarc7/guix-bioinformatics into dennisPjotr Prins
2016-03-19Arrayfire now builds on GNU GuixDennis E. Mungai
Mission accomplished. Praise the sun!!!
2016-03-19Add more native deps Dennis E. Mungai
See the cmake configuration options used.
2016-03-19Use the system's Boost Compute library as an input Dennis E. Mungai
See the CMake configuration string for details. Investigating a latent build failure.
2016-03-19Broken build, still cannot detect Boost.ComputeDennis E. Mungai
To be fixed. To build, you need to disable the OpenCL back-end.
2016-03-19Package successfully ported to GNU GuixDennis E. Mungai
Praise the sun !
2016-03-19Fixes. Package still fails to buildDennis E. Mungai
Investigate and patch later.
2016-03-19ported gtest to guixDennis E. Mungai
Cleanup pending. Package builds. Need to trim inputs.
2016-03-18fix conflictpjotrp
2016-03-18Merge branch 'master' into dennispjotrp
2016-03-18Meregpjotrp
2016-03-18Added clBLASDennis E. Mungai
Build fails due to googletest's missing target "install". Investigating.
2016-03-18Ported clFFT to GNU GuixDennis E. Mungai
Package builds successfully.
2016-03-18Package now builds on GNU GuixDennis E. Mungai
Caveats: Only the CPU back-end builds at the moment. Needed inputs for OpenCL backends: clFFT and clBLAS.
2016-03-18Use proper formatting for License listsDennis E. Mungai
Also updates the Arrayfire fetch URL to the one hosted by Arrayfire as Github's generated tarballs do not package the required submodules.
2016-03-18WIP: Add varscan.Roel Janssen
The JAR construction cannot contain a wild-card. That has to be fixed.
2016-03-18Bump version to v3.3.3Dennis E. Mungai
Also change licensing schema with #prefix (es). Solves namespace problems. Also added wget as an input (As it's needed as a fallback incase checksums for Boost are invalid).
2016-03-16Add delly.Roel Janssen
2016-03-16Add contra.Roel Janssen
2016-03-15Added Java packages, working, WIP and ON HOLD.Roel Janssen
2016-03-12Add a few more deps (needed glut)Dennis E. Mungai
Intel's Beignet package still can't build on guix, complains about libclang.
2016-03-12Add Intel Beignet to guixDennis E. Mungai
This is Intel's Beignet, Intel's OpenCL platform for their GPUs and CPUs.
2016-03-12WIPDennis E. Mungai
Work in progress. Investigate,
2016-03-11Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-11Added test suite to pindel package.Roel Janssen
2016-03-11Small compile fixes for pindelpjotrp
2016-03-10Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-10Add multiple packages.Roel Janssen
- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib
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