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2021-01-13gn: update ratspub to 0.4.5.Efraim Flashner
2021-01-12gn: javascript: Add xtermjs and associated css stylingAlexanderkabui
* gn/packages/javascript.scm: (javascript-xterm): New package. (javascript-xterm-style): New package. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-12gn: genenetwork1: Create "useralt" and replace "user" with itBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork1): [arguments]: In 'changes-for-deployed-service, copy "web/webqtl/user" to "web/webqtl/useralt" and replace how "user" is imported in "web/webqtl/main.py"
2021-01-09ruby-redis: newpjotrp
2021-01-09gemma: revert to latestpjotrp
2021-01-09fixpjotrp
2020-12-17gn: lizardfs: Update packageEfraim Flashner
2020-12-17gn: python-twint: Patch Token class in order to get refreshTokensBonfaceKilz
* gn/packages/twint.scm [patches]: Add python-twint-token.patch. * python-twint-token.patch: New file.
2020-12-16gn: javascript: Update javascript-underscore to 1.12.0BonfaceKilz
2020-12-16Updated gemmapjotrp
2020-12-15octopus: Add lizardfs serviceEfraim Flashner
2020-12-15Update gemma-gn2pjotrp
2020-12-15Updated gemma package for GN2pjotrp
2020-12-15Try htslib with codecspjotrp
2020-12-15Remove stuff that is in trunkpjotrp
2020-12-15gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamedEfraim Flashner
2020-12-15gn: javascript: Use correct datatable-scroller libraryAlexanderkabui
* gn/packages/javascript.scm (javascript-datatables-scroller): Update to 2.0.3. [propagated-inputs]: Add javascript-datatables-scroller-style. [synopsis]: Update it. (javascript-datatables-scroller-style): New package. Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com>
2020-12-06gn: python3-genenetwork2: Generate svg graph from python3-packageBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [native-inputs]: Add graphviz. [arguments]{generate-dag-svg-file}: New phase.
2020-12-06gn: python3-genenetwork2: Remove unnecessary begin formBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments] {generate-graph}: Remove begin form.
2020-12-04gn: python3-genenetwork2: Generate graph from python3-packageBonfaceKilz
* gn/packages/genenetwork.scm: Add new #:use-modules: (guix graph) (guix scripts graph) (guix store) (python3-genenetwork2)[arguments]{generate-graph}: New phase after install that uses d3js to generate a new graph which uses d3js as a backend.
2020-12-04gn: python3-genenetwork2: Add package link in generated deps fileBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add link to "genenetwork.scm" file.
2020-12-02gn: python3-genenetwork2: Generate static dependencies fileBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add new phase after "install" that generates a "DEPENDENCY.md" file which will be displayed in the gn2 web interface.
2020-11-29gn: remove unecessary importEfraim Flashner
2020-11-29gn: python-xlsxwriter available upstream.Efraim Flashner
2020-11-28gemma-gn2: updated to latestpjotrp
2020-11-25gn: Add lizardfsEfraim Flashner
2020-11-23upstream cwltools and dependant packagesEfraim Flashner
2020-11-21Updated CWLpjotrp
2020-11-21cwltools: updatedPjotr Prins
2020-11-20gn: genenetwork2: Remove vim from propagated inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): [propagated-inputs]: Remove vim. Right now, building vim fails, thereby causing python3-genenetwork2 to fail.
2020-11-20gn: python3-genenetwork: Replace python-mistune with python-markdownBonfaceKilz
2020-11-19gn: python3-genenetwork2: Comment out python-flask-socketioBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Comment out python-flask-socketio. Causes build on Penguin2 to fail.
2020-11-17gn: python-flask-socketio: New inputsBonfaceKilz
* gn/packages/python.scm (python-flask-socketio): Add support for eventlet. [propagated-inputs]: Add python-dnspython, python-eventlet, python-monotonic.
2020-11-17gn: python3-genenetwork2: Add python-flask-socketioBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add python-flask-socketio.
2020-11-16gn: python: Add python-flask-socketioBonfaceKilz
2020-11-16gn: python: Add python-socketioBonfaceKilz
2020-11-16gn: python: Add python-engioneioBonfaceKilz
2020-11-16gn: python3-genenetwork2: Add javascript-ckeditorBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add javascript-ckeditor.
2020-11-14gn: python3-genenetwork2: Add python-rdflibBonfaceKilz
2020-11-12gn: python24-parallel: Fix package description.Efraim Flashner
2020-11-12python24-pp: rename to python24-parallelEfraim Flashner
2020-11-12gn: python24-pp: Inherit from python-paralllel.Efraim Flashner
2020-11-10gn: bh20-seq-resource: Add python-twint as inputBonfaceKilz
* gn/packages/bioinformatics.scm (bh20-seq-resource): [propagated-input]: Add python-twint.
2020-11-10gn: python-twint: Patch twint to fix some bugsBonfaceKilz
* gn/packages/twint.scm (python-twint): [patches]: Add 2 new patches. [arguments]: Rename 'cast-variables-properly to 'twint-hot-fixes. * python-twint-mentions.patch: New file. * python-twint-userlist.patch: New file. See: https://github.com/twintproject/twint/issues/1012
2020-11-10gn: python-twint: Add substitute that casts some params properlyBonfaceKilz
2020-11-05Indent file properlyBonfaceKilz
* gn/packages/twint.scm: Indent the whole file properly.
2020-11-05gn: python-twint: Upgrade package.BonfaceKilz
* gn/packages/twint.scm (python-twint): [source]: Update to commit a45a8a which by-passes twitters move on removing their v1 apis. [arguments]: Delete "dataclasses" dependency from setup.py. [propagated-inputs]: Remove python-aiodns and python-pysocks. Use python-aiohttp-socks v0.5.5 and python-yarl v1.6.2.
2020-11-05gn: python-yarl: Add v1.6.2BonfaceKilz
* gn/packages/twint.scm (python-yarl): New package
2020-11-05gn: python-aiohttps: Add v3.7.2BonfaceKilz
* gn/packages/twint.scm (python-aiohttp-3.7.2): New package.
2020-11-05gn: python-socks: New packageBonfaceKilz
* gn/packages/twint.scm (python-socks): New package.
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