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2024-09-12GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
Update to latest commit with @pjotr's changes.
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
Push fix below: https://github.com/genenetwork/genenetwork2/commit/8618fdc8f4c05153f48e1afdbf9d2c337ba79929
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
This pushes fix for the bug caused by using relative paths for font files.
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
This update pushes some logging of a font file. The purpose is to debug relative paths, and prove/disprove a hypothesis.
2024-09-10Revert "gn: gemma-wrapper: updated to 0.99.7"Frederick Muriuki Muriithi
This reverts commit 7eaa7028ffe3e8b0d5dfe242da87dd76930f637e. This does not include all the dependencies needed to run GEMMA. These were included with commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070 later, but that also had to be reverted due to another issue altogether.
2024-09-10Revert "(gn packages gemma-wrapper): Add new dependencies."Frederick Muriuki Muriithi
This reverts commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070. At this point, running GEMMA will fail because it attempts to extract files into the /tmp directory, which leads to permission issues when there is an attempt to change the permission bits of /tmp.
2024-09-10(gn packages gemma-wrapper): Add new dependencies.Frederick Muriuki Muriithi
2024-09-10genenetwork2: Update commit and hashFrederick Muriuki Muriithi
2024-08-26gn: mouse-longevity: Remove breaking line until resolved.jgart
2024-08-21gn: mouse-longevity: Update to 8a7fdd3.jgart
2024-08-16gn: mouse-longevity: Update to d798fc1jgart
2024-08-15gn: mouse-longevity: Update upstream url.jgart
2024-08-15gn: genenetwork2: Update genenetwork2 with new markdown client deps.Alexander_Kabui
* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add javascript-ace, javascript-diff, javascript-diff2html, javascript-diff2html-ui javascript-highlight, javascript-highlight-ui, javascript-marked, javascript-marked-highlight. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-15gn: javascript: Add javascript-highlight-ui.Alexander_Kabui
* gn/packages/javascript.scm (javascript-highight-ui): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-15gn: javascript: Add javascript-highlight.Alexander_Kabui
* gn/packages/javascript.scm (javascript-highlight): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-15gn: javascript: Add javascript-diff.Alexander_Kabui
* gn/packages/javascript.scm (javascript-diff): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-15gn: javascript: Add javascript-diff2html-ui.Alexander_Kabui
* gn/packages/javascript.scm (javascript-diff2html-ui): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-15gn: javascript: Add javascript-diff2html.Alexander_Kabui
* gn/packages/javascript.scm (javascript-diff2html): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-15gn: javascript: Update javascript-ace.Alexander_Kabui
* gn/packages/javascript.scm: (javascript-ace): Update License. Apply guix style. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-13gn-auth: Update commit and hash.Frederick Muriuki Muriithi
2024-08-08gn-auth: update commit and hash.Frederick Muriuki Muriithi
2024-08-07gn-auth: Update commit and hashFrederick Muriuki Muriithi
Update the hash to pull in fixes for the following ops issues: * Installing of Jinja2 text-file templates for emails * Logging out unhandled exceptions as errors for easier debugging
2024-08-07Production releaseFrederick Muriuki Muriithi
* GN2: 0998033d0a7ea26ed96b00a360a334bae6de8c55 * GN3: efa965c34db3662762dde8ecf376cce561d85453 * GN-AUTH: eb05221f57ec4b6a5537ac7661811ba33b4b0385
2024-07-31genecup: disable debug mode in flask application for productionjgart
2024-07-31mouse-longevity-app: extract the pubmed archive in the packagejgart
2024-07-31gn: Add mouse-longevity-app.jgart
* gn/packages/mouse-longevity.scm (mouse-longevity-app): New variable.
2024-07-31genecup: update urljgart
2024-07-25gn-uploader: (python-flask-session): New dependency.Frederick Muriuki Muriithi
2024-07-25gn-uploader: (python-pymonad): New dependency.Frederick Muriuki Muriithi
2024-07-25gn-uploader: (python-authlib): New dependency.Frederick Muriuki Muriithi
2024-07-17gn-auth and GN2: Update commits and hashes.Frederick Muriuki Muriithi
2024-07-15gn-auth: Add commit and revision to version. Update commit and hash.Frederick Muriuki Muriithi
2024-07-09GN3: update commit and hash.Frederick Muriuki Muriithi
2024-07-08gn-uploader: Add node-resumablejs as a dependency.update-gn3-for-production-containerFrederick Muriuki Muriithi
2024-07-08GN3: update commit and hash.Frederick Muriuki Muriithi
2024-07-06gn: gemma-wrapper: updated to 0.99.7pjotrp
2024-06-28genenetwork-full-system: Do synchronised releaseFrederick Muriuki Muriithi
Do a syncronised release of the genenetwork full system (it's not actually full, since gn-uploader is not yet part of the release, but it's good enough), with the following commits for the various parts: * GeneNetwork2: deb8d7241f1ca05865fababc2799ead9a684f8be * GeneNetwork3: 9f27bdc3ca41e09a090093bc36f48851fcc4fc42 * gn-auth: c8658a764cf30605c6e5a1361dcd09ddd422e371
2024-06-22rename ratspub.scm to genecup.scmShepherd on Tux02
2024-06-21ratspub: remove definitions as they are replaced by genecupShepherd on Tux02
2024-06-21genecup: fix typopjotrp
2024-06-20genecup: use keras without testsPjotr Prins
2024-06-14gn-uploader: (javascript-jquery): New dependencyFrederick Muriuki Muriithi
JQuery is needed to get the bootstrap plugins working correctly.
2024-06-13gn-uploader: javascript-bootstrap: New dependencyFrederick Muriuki Muriithi
Bundle javascript-bootstrap with gn-uploader for styling.
2024-06-12gn-uploader: Fix indentation.Frederick Muriuki Muriithi
2024-05-09Fix path to error GIFs.Munyoki Kilyungi
Co-authored-by: Alexander <alexanderkabua@gmail.com>
2024-04-19gn: Add hifiasm.Arun Isaac
* gn/packages/bioinformatics.scm (hifiasm): New variable.
2024-04-09gn: javascript: Fix failing javascript-xterm build.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-xterm): Update hash. [native-inputs]: Move this ... [propagated-inputs]: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-05genenetwork2-stable: update hashPjotr Prins