| Age | Commit message (Expand) | Author |
|---|
| 2019-08-09 | gn: openfbya: Clean up package....* gn/packages/openfyba.scm (openfyba)[source]: Don't use unstable
tarball.
[arguments]: Use 'boostrap phase to replace 'boostrap phase. Adjust for
change in source.
| Efraim Flashner |
| 2019-08-09 | gn: 4store upstreamed | Efraim Flashner |
| 2019-08-06 | gn: clFFT: Update to 2.12.2....* gn/packages/arrayfire.scm (clFFT): Update to 2.12.2.
| Efraim Flashner |
| 2019-08-06 | gn: Fix building arrayfire. | Efraim Flashner |
| 2019-08-05 | gn: varscan: Fix build....* gn/packages/bioinformatics.scm (varscan)[arguments]: Disable tests.
Update all custom phases.
[home-page]: Use https.
[description]: Add it.
| Efraim Flashner |
| 2019-08-05 | gn: remove some upstream packages | Efraim Flashner |
| 2019-08-05 | gn: Remove some duplicate packages | Efraim Flashner |
| 2019-08-05 | gn: contra: Remove bundled source....* gn/packages/bioinformatics.scm (contra)[source]: Add snippet to remove
bundled sources.
| Efraim Flashner |
| 2019-08-05 | gn: contra: Update package definition....* gn/packages/bioinformatics.scm (contra)[arguments]: Update custom
'install phase.
| Efraim Flashner |
| 2019-08-05 | gn: contra: Update source uri....* gn/packages/bioinformatics.scm (contra)[source]: Update to new folder
structure.
| Efraim Flashner |
| 2019-08-05 | gn: pindel: Update package definition....* gn/packages/bioinformatics.scm (pindel)[arguments]: Use 'invoke' when
possible. Parameterize custom 'check phase.
| Efraim Flashner |
| 2019-08-05 | gn: pindel: Don't use unstable tarball....* gn/packages/bioinformatics.scm (pindel)[source]: Download using
'git-fetch'.
| Efraim Flashner |
| 2019-08-05 | gn: Add edirect-11....* gn/packages/bioinformatics.scm (edirect-11): New variable.
| Efraim Flashner |
| 2019-08-05 | gn: Add ratspub....* gn/packages/ratspub.scm (ratspub): New variable.
| Efraim Flashner |
| 2019-08-04 | gn: rust-qtlreaper: Update with upstream changes....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Remove custom
phases.
| Efraim Flashner |
| 2019-08-04 | bnw: Build binaries....* gn/packages/bnw.scm (bnw)[build-system]: Use gnu-build-system.
[arguments]: Adjust accordingly.
[native-inputs]: Remove source.
[inputs]: Remove bash-minimal, add rmath-standalone.
| Efraim Flashner |
| 2019-08-01 | Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformatics | Pjotr Prins |
| 2019-07-30 | minor rust updates | Efraim Flashner |
| 2019-07-30 | gn: minor rust updates | Efraim Flashner |
| 2019-07-29 | gn: python-shellescape: Clean up package definition....* gn/packages/python.scm (python-shellescape): Re-indent.
[source]: Use pypi uri.
[inputs]: Move python-setuptools ...
[native-inputs]: ... to here.
[license]: Use 'license' prefix.
| Efraim Flashner |
| 2019-07-29 | gn: python-subprocess32: Correctly mark as version 3.5.3....* gn/packages/python.scm (python-subprocess32): Re-indent.
[version]: Correct to 3.5.3, which is what the source was downloading.
[source]: Use pypi uri.
| Efraim Flashner |
| 2019-07-29 | gn: python-typing-extensions: Clean up package definition....* gn/packages/python.scm (python-typing-extensions): Re-indent.
[source]: Use pypi uri.
| Efraim Flashner |
| 2019-07-29 | gn: python-bagit: Clean up package definition....* gn/packages/python.scm (python-bagit)[source]: Use pypi uri.
[synopsis, description]: Update.
| Efraim Flashner |
| 2019-07-29 | gn: Add rust-qtlreaper and dependencies....* gn/packages/genenetwork.scm (rust-qtlreaper): New variable.
* gn/packages/crates-io.scm (~300 packages): New variables.
| Efraim Flashner |
| 2019-07-22 | gn: bnw: Add javascript libraries....* gn/packages/bnw.scm (bnw)[inputs]: Add web-jquery, web-font-awesome,
javascript-cytoscape, javascript-cytoscape-2, javascript-dagre,
javascript-lodash, javascript-cytoscape-dagre,
javascript-cytoscape-panzoom, javascript-d3js-4, javascript-d3js-multi,
javascript-canvas-toblob, javascript-filesaver.
[arguments]: Add references to new inputs.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-filesaver....* gn/packages/javascript.scm (javascript-filesaver): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-canvas-toblob....* gn/packages/javascript.scm (javascript-canvas-toblob): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-d3js-multi....* gn/packages/javascript.scm (javascript-d3js-multi): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-d3js-4....* gn/packages/javascript.scm (javascript-d3js-4): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-d3js....* gn/packages/javascript.scm (javascript-d3js): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-lodash....* gn/packages/javascrpt.scm (javascript-lodash): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add font-awesome....* gn/packages/web.scm (font-awesome): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-cytoscape-dagre....* gn/packages/javascript.scm (javascript-cytoscape-dagre): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: Add javascript-dagre....* gn/packages/javascript.scm (javascript-dagre): New variable.
| Efraim Flashner |
| 2019-07-22 | gn: bnw: Patch '/usr/bin/dot' references....* gn/packages/bnw.scm (bnw): Add substitute* to patch '/usr/bin/dot'
calls with store graphviz references.
| Efraim Flashner |
| 2019-07-21 | gn: Add javascript-cytoscape-popper....* gn/packages/web.scm (javascript-cytoscape-popper): New variable.
| Efraim Flashner |
| 2019-07-21 | gn: Add javascript-qtip2....* gn/packages/javascript.scm (javascript-qtip2): New variable.
| Efraim Flashner |
| 2019-07-21 | gn: web-bootstrap-native: Clean up package....* gn/packages/web.scm (web-bootstrap-native): Re-indent.
[arguments]: Clean up build.
| Efraim Flashner |
| 2019-07-21 | gn: web-bootstrap: Update to 4.3.1....* gn/packages/web.scm (web-bootstrap): Update to 4.3.1.
| Efraim Flashner |
| 2019-07-21 | gn: web-bootstrap: Clean up package....* gn/packages/web.scm (web-bootstrap)[source]: Download using 'git-fetch'.
[native-inputs]: Remove unzip.
[arguments]: Adjust accordingly.
[home-page]: Use https.
| Efraim Flashner |
| 2019-07-21 | gn: web-jquery: Update to 3.4.1....* gn/packages/web.scm (web-jquery): Update to 3.4.1.
| Efraim Flashner |
| 2019-07-21 | gn: web-jquery: Clean up package....* gn/packages/web.scm (web-jquery)[source]: Download with 'git-fetch'.
[native-inputs]: Remove unzip.
[arguments]: Adjust accordingly.
[home-page]: Use https.
[synopsis]: Update synopsis.
[description]: Flesh out description.
| Efraim Flashner |
| 2019-07-21 | gn: javascript-datatables: Update to 1.10.19....* gn/packages/javascript.scm (javascript-datatables): Update to 1.10.19.
[source]: Download using git-fetch.
[native-inputs]: Remove gzip, tar.
[inputs]: Move javascript-cytoscape ...
[propagated-inputs]: ... to here.
[arguments]: Adjust accordingly.
[home-page]; Update home-page.
[synopsis]: Update synopsis.
[description]: Flesh out description.
| Efraim Flashner |
| 2019-07-21 | gn: javascript-cytoscape-qtip: Clean up definition....* gn/packages/javascript.scm (javascript-cytoscape-qtip)[source]:
Download using 'git-fetch'.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
[synopsis]: Update synopsis.
| Efraim Flashner |
| 2019-07-21 | gn: javascript-cytoscape-panzoom: Update to 2.5.3....* gn/packages/javascript.scm (javascript-cytoscape-panzoom): Update to 2.5.3.
[source]: Download with git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
[home-page]: Update home-page.
[synopsis]: Update synopsis.
[description]: Flesh out description.
| Efraim Flashner |
| 2019-07-21 | gn: Add javascript-cytoscape-2....* gn/packages/javascript.scm (javascript-cytoscape-2): New variable.
| Efraim Flashner |
| 2019-07-21 | gn: javascript-cytoscape: Update to 3.8.1....* gn/packages/javascript.scm (javascript-cytoscape): Update to 3.8.1.
[source]: Download using git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Change build script accordingly.
[home-page]: Update home-page.
[synopsis]: Update synopsis.
[description]: Flesh out description.
| Efraim Flashner |
| 2019-07-21 | gn: javascript-twitter-post-fetcher: Update to 18.0.2-1.8f9e667....* gn/packages/javascript.scm (javascript-twitter-post-fetcher): Update
to 18.0.2-1.8f9e667.
[version]: Use 'git-version'.
[arguments]: Simply build phase.
[description]: Update description.
| Efraim Flashner |
| 2019-07-19 | gn: Add BNW....* gn/packages/bnw.scm (bnw): New variable.
| Efraim Flashner |
| 2019-07-14 | gn: Add python2 versions of GN1 thirdparty packages. | Efraim Flashner |
