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2023-10-27Update dependencies: genenetwork3 and gn-authFrederick Muriuki Muriithi
* genenetwork3: Remove `yoyo-migrations` as a dependency * gn-auth: Use the upstream `yoyo-migrations` * Remove temporary local definition for yoyo-migrations.
2023-10-19Remove python-arvados-python-client.Arun Isaac
The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. Restore it later if necessary. * gn/packages/python.scm (python-arvados-python-client): Delete variable.
2023-09-25Delete python-mypy-0.981.Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05gn: python: Add python-mypy-0.981Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05gn: python: Add yoyo-migrations-8.2.0Munyoki Kilyungi
* gn/packages/python.scm: Import (gnu packages databases) and (guix hg-download). (yoyo-migrations-8.2.0): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-14gn: genecup: Use correct python-h5py.Efraim Flashner
* gn/packages/python.scm (python-h5py-2): New variable. * gn/packages/machine-learning.scm (tensorflow-native): Remove comments. * gn/packages/ratspub.scm (use-corrected-inputs): New procedure. (genecup-with-tensorflow-native, genecup-latest-with-tensorflow-native): Use use-corrected-inputs.
2023-03-22python-rdflib-shim: Build with upstream python-rdflib-jsonld.Efraim Flashner
* gn/packages/python.scm (python-rdflib-shim)[source]: Add snippet to use any version of python-rdflib-jsonld. [propagated-inputs]: Replace python-rdflib-jsonld-0.6.1 with python-rdflib-jsonld. (python-rdflib-jsonld-0.6.1): Remove variable.
2023-03-22Add python-pytest-runner-4.Efraim Flashner
* gn/packages/python.scm (python-pytest-runner-4): New variable. * gn/packages/bioinformatics.scm (python-pytest-runner-2): MOve to python.scm
2023-03-22fixup python-pyshexcEfraim Flashner
2023-03-22python-pyshex: Downgrade to 0.7.14.Efraim Flashner
* gn/packages/python.scm (python-pyshex): Downgrade to 0.7.14. [arguments]: Disable tests. Add phase to fix compatibility with rdflib-6. Adjust custom 'check phase. [propagated-inputs]: Remove python-chardet. Replace python-pyshexc with python-pyshexc-0.7, python-rdflib-shim with python-rdflib, python-sparqlsluper with python-sparql-slurper.
2023-03-22Add python-py-dateutil.Efraim Flashner
* gn/packages/python.scm (python-py-dateutil): New variable.
2023-03-22Add python-pyshexc-0.7.Efraim Flashner
* gn/packages/python.scm (python-pyshexc-0.7): New variable.
2023-03-22Add python-pytest-5.Efraim Flashner
* gn/packages/python.scm (python-pytest-5): New variable.
2023-03-20python-arvados-python-client: Update to 2.5.0.Efraim Flashner
* gn/packages/python.scm (python-arvados-python-client): Update to 2.5.0. [source]: Add snippet to not limit the maximum version of pycurl. [propagated-inputs]: Add python-google-api-core-1, python-google-auth-1, python-protobuf, python-pyparsing-2.4.7, python-ruamel.yaml. Remove python38-ruaml.yaml-0.15.76, python-setuptools, python-oauth2client, python-uritemplate. (python38-ruaml.yaml-0.15.76): Remove variable.
2023-03-20python-shexjsg: Update to 0.8.2.Efraim Flashner
* gn/packages/python.scm (python-shexjsg): Update to 0.8.2. [arguments]: Remove custom 'patch-source phase. Update custom 'check phase. [propagated-inputs]: Remove python-antlr4-python3-runtime, python-certifi, python-chardet, python-idna, python-isodate, python-requests, python-urllib3. [native-inputs]: Add python-rdflib-shim, python-requests. Remove python-pyparsing, python-pyshexc, python-rdflib, python-rdflib-jsonld, python-six, custom test-suite git checkout.
2023-03-20Add python-sparqlslurper.Efraim Flashner
* gn/packages/python.scm (python-sparqlslurper): New variable.
2023-03-20Add python-rdflib-shim.Efraim Flashner
* gn/packages/python.scm (python-rdflib-shim): New variable. (python-rdflib-jsonld-0.6.1): New variable.
2023-03-20python-pyshex: Update to 0.8.1.Efraim Flashner
* gn/packages/python.scm (python-pyshex): Update to 0.8.1. [arguments]: Remove custom 'patch-source phase. Update custom 'check phase. [propagated-inputs]: Add python-chardet, python-rdflib-shim, python-sparqlslurper. Remove python-rdflib, python-rdflib-jsonld, python-pbr, python-sparql-slurper. [native-inputs]: Add python-pbr, python-unitttest2.
2023-03-20python-pyshexc: Update to 0.9.1.Efraim Flashner
* gn/packages/python.scm (python-pyshexc): Update to 0.9.1. [arguments]: Update custom 'check phase. [propagated-inputs]: Add python-chardet, python-rdflib-shim, python-shexjsg. Remove python-rdflib, python-rdflib-jsonld, python-requests. [native-inputs]: Add python-pbr, python-requests. Remove python-shexjsg, custom test-suite git checkout. (python-shexjsg-min): Remove variable.
2023-03-19python-pyjsg: Update to 0.11.10.Efraim Flashner
* gn/packages/python.scm (python-pyjsg): Update to 0.11.10. [arguments]: Remove 'patch-source phase. Skip 1 set of tests in custom 'check phase. [propagated-inputs]: Move python-requests ... [native-inputs]: ... to here. Add python-unittest2. Remove test-suite checkout.
2023-03-19python-antlr4-python3-runtime: Update to 4.9.3.Efraim Flashner
* gn/packages/python.scm (python-antlr4-python3-runtime): Update to 4.9.3.
2023-03-19python-pytest-4: Add missing input.Efraim Flashner
* gn/packages/python.scm (python-pytest-4)[native-inputs]: Add python-atomicwrites.
2022-12-04gn: Replace IPFS links in python24 and python with GN file serverPjotr Prins
2022-06-07gn: Fix building python2-rpy2.Efraim Flashner
2022-06-07gn: Hide inputs which have been dropped by Guix.Efraim Flashner
2022-06-07gn: Add missing module importsEfraim Flashner
2022-04-20Remove upstreamed packagesEfraim Flashner
2022-04-12gn: python-rpy2-next: Remove package.Alexander
python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2022-04-04gn: packages: python: add python-supervisorjgart
todo: fix tests: https://github.com/NixOS/nixpkgs/blob/nixos-21.11/pkgs/development/python-modules/supervisor/default.nix#L16
2022-03-07python-pytest-pudb: enable testsjgart
add more to description field
2022-03-03gn: Add pytest-pudbBonfaceKilz
* gn/packages/python.scm: New package.
2021-12-07remove pudbjgart
https://issues.guix.gnu.org/52177
2021-12-03add pudbjgart
2021-11-19gnu: Add python-requirements-parser.jgart
* gn/packages/python.scm (python-requirements-parser): New variable.
2021-11-16gn: python-sparqlwrapper: Remove package.Arun Isaac
python-sparqlwrapper has been upstreamed. * gn/packages/python.scm (python-sparqlwrapper): Delete variable.
2021-11-10Remove python-flask-socketio.Arun Isaac
python-flask-socketio has been upstreamed. * gn/packages/python.scm (python-flask-socketio): Delete variable.
2021-11-08gn: Remove upstreamed packages.Arun Isaac
* gn/packages/python.scm (python-webcolors): Delete variable. * gn/packages/messaging.scm: Delete file.
2021-11-04gnu: Add python-webcolors.Arun Isaac
* gn/packages/python.scm (python-webcolors): New variable.
2021-10-27gn: python-htmlgen: Download using git-fetch.Efraim Flashner
2021-08-16gn: Add python-flask-debugtoolbar.BonfaceKilz
* gn/packages/python.scm (python-flask-debugtoolbar): New variable.
2021-06-30python gone missing conflict ;)pjotrp
2021-06-18python-rpy2-next: Update to 3.4.5BonfaceKilz
2021-05-30gn: comment out unpackaged inputsEfraim Flashner
2021-05-27gn: upstream some librariesEfraim Flashner
2021-05-24gn: visuals webservice proof-of-conceptEfraim Flashner
2021-05-13gn: python-sqlalchemy-stubs is upstream.Efraim Flashner
2021-04-23gn: python: Add python2-werkzeug.BonfaceKilz
* gn/packages/python.scm (python2-werkzeug): New variable. This was deprecated upstream.
2021-04-23gn: python: Add python2-flaskBonfaceKilz
* gn/packages/python.scm: New variable. This was deprecated upstream.
2021-04-20gn: python: Add python-rpy2-nextBonfaceKilz
2021-03-22gn: python-sqlalchemy-stubs: Add new packageBonfaceKilz
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-01 16:22:48 +0000