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path: root/gn/packages/genenetwork.scm
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2021-10-06gn: Update genenetwork3 to 0.0.1-guix-77c274bBonfaceKilz
2021-09-29gn: Add r-wgcna, r-rjson to genenetwork3.Alexander Kabui
* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
2021-08-28Moved packages into past/genenetwork1 and packages/pangenome to reduce chance ofpjotrp
breaking the main genenetwork packages.
2021-08-28Remove golang module loaderpjotrp
2021-08-24genenetwork[23]: updated git checkout and commented out DAG generationPjotr Prins
2021-08-20gn: Add missing importEfraim Flashner
2021-08-18Remove csv-diff from channel.BonfaceKilz
This is already packaged upstream. * gn/packages/genenetwork.scm: Remove "(gn packages golang)" import. * gn/packages/golang.scm: Delete file.
2021-08-16gn: Add toolbar overlay for debugging genenetwork2BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-flask-debugtoolbar
2021-08-16gn: start moving calculated files to build separatelyEfraim Flashner
2021-08-15gn: genenetwork2: Don't hardcode python version.Efraim Flashner
2021-08-12gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"BonfaceKilz
This fixes this error: guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
2021-08-11gn: fix genenetwork2 package definitionEfraim Flashner
2021-08-11fixup genenetwork2Efraim Flashner
2021-08-09gn: Adjust genenetwork2 for removal of python2-genenetwork2Efraim Flashner
2021-08-07python2-genenetwork2: remove unused Python2 version of genenetworkpjotrp
2021-08-05gn: Update genenetwork3 to 0.0.1-guix-487e50eBonfaceKilz
2021-08-03gn: genenetwork3: Add csvdiff as a propagated inputBonfaceKilz
2021-08-02gn: code updatesEfraim Flashner
2021-07-12gn: Update genenetwork3 to 0.0.1-guix-7d22039BonfaceKilz
2021-07-11gn: Add python24-direct.Efraim Flashner
* gn/packages/python24.scm (python24-direct): New variable. * gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add python24-direct.
2021-07-11Added GNU parallel to genenetwork2pjotrp
2021-06-07gn: Update genenetwork3 to 0.0.1-guix-3881b50BonfaceKilz
2021-05-27gn: Update genenetwork3 to 0.0.1-guix-cd08b40BonfaceKilz
2021-05-13gn: Update genenetwork3 to 0.0.1-guix-09f6992BonfaceKilz
2021-05-13genenetwork2: add python-configparserPjotr Prins
2021-05-13gn: Add r-qtl, r-stringi to genenetwork3.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-qtl and r-stringi.
2021-05-12Made python3-genenetwork2 the default!Pjotr Prins
2021-05-12gn: Add r-optparse to genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-optparse
2021-05-10gn: genenetwork: Add genenetwork3 as input.BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add genenetwork3.
2021-05-10gn: genenetwork: Remove racket-minimal from gn2 inputs.BonfaceKilz
* gn/packages/genenetwork.scm [propagated-inputs]: Remove racket-minimal.
2021-05-10gn: genenetwork: Add genenetwork3.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): New variable.
2021-05-10gn: genenetwork: Add autopep8 and pylint to python3-genenetwork2.BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add python-autopep8 and python-pylint.
2021-04-20gn: genetwork: Propagate python-rpy2-nextBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Use python-rpy2-next.
2021-02-05gn1: make run in a containerroot
2021-02-05Move packages to genetwork1 propagated inputsBonfaceKilz
* gn/services/genenetwork.scm: Move some package defs to ... * gn/packages/genenetwork.scm [propagated-inputs]: ... here.
2021-02-03gn: javascript: Add javascript-font-awesomeAlexander Kabui
* gn/packages/javascript.scm: (javascript-font-awesome): New package. * gn/packages/javascript.scm: (genenetwork2) [propagated-inputs]: Add javascript-font-awesome. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-31gn: javascript: Replace javascript-zxcvbn-async with javascript-zxcvbnAlexander Kabui
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-12gn: genenetwork1: Create "useralt" and replace "user" with itBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork1): [arguments]: In 'changes-for-deployed-service, copy "web/webqtl/user" to "web/webqtl/useralt" and replace how "user" is imported in "web/webqtl/main.py"
2020-12-15gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamedEfraim Flashner
2020-12-06gn: python3-genenetwork2: Generate svg graph from python3-packageBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [native-inputs]: Add graphviz. [arguments]{generate-dag-svg-file}: New phase.
2020-12-06gn: python3-genenetwork2: Remove unnecessary begin formBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments] {generate-graph}: Remove begin form.
2020-12-04gn: python3-genenetwork2: Generate graph from python3-packageBonfaceKilz
* gn/packages/genenetwork.scm: Add new #:use-modules: (guix graph) (guix scripts graph) (guix store) (python3-genenetwork2)[arguments]{generate-graph}: New phase after install that uses d3js to generate a new graph which uses d3js as a backend.
2020-12-04gn: python3-genenetwork2: Add package link in generated deps fileBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add link to "genenetwork.scm" file.
2020-12-02gn: python3-genenetwork2: Generate static dependencies fileBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add new phase after "install" that generates a "DEPENDENCY.md" file which will be displayed in the gn2 web interface.
2020-11-20gn: genenetwork2: Remove vim from propagated inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): [propagated-inputs]: Remove vim. Right now, building vim fails, thereby causing python3-genenetwork2 to fail.
2020-11-20gn: python3-genenetwork: Replace python-mistune with python-markdownBonfaceKilz
2020-11-19gn: python3-genenetwork2: Comment out python-flask-socketioBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Comment out python-flask-socketio. Causes build on Penguin2 to fail.
2020-11-17gn: python3-genenetwork2: Add python-flask-socketioBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add python-flask-socketio.
2020-11-16gn: python3-genenetwork2: Add javascript-ckeditorBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add javascript-ckeditor.
2020-11-14gn: python3-genenetwork2: Add python-rdflibBonfaceKilz
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-05 16:52:57 +0000