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2022-01-06gn: genenetwork: Add diffutilsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add diffutils.
2022-01-05Revert "gn: genenetwork: Add pudb"BonfaceKilz
This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra dependency by running something like: ``` guix shell -L /home/bonface/projects/guix-bioinformatics \ -L /home/bonface/projects/guix-past/modules -C \ -D pudb -f guix.scm ```
2022-01-05gn: genenetwork: Add pudbBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add pudb for trouble-shooting purposes.
2022-01-01genenetwork3: updated and disabled testsPjotr Prins
2022-01-01genenetwork2: put a hack in to fix failing build. Please amendPjotr Prins
2021-12-29Fix typo in import of (gnu packages textutils).Arun Isaac
* gn/packages/genenetwork.scm: Import (gnu packages textutils), not (gn packages textutils).
2021-12-21gn/packages/genenetwork.scm: Use csvdiff from textutils.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): Use updated version of csvdiff from textutils.
2021-12-09gn: genenetwork: Define version using git-version.Arun Isaac
Also, semantic versioning starts from 0.1.0, not 0.0.1. * gn/packages/genenetwork.scm (genenetwork3)[version]: Use git-version.
2021-12-09gn: genenetwork: Reorganize inputs.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove python-sqlalchemy-stubs. Add python-sparqlwrapper and rust-qtlreaper. Sort all inputs.
2021-11-17gn: genenetwork: Add javascript-xterm , javascript-xterm-style, ↵Alexander Kabui
javascript-xterm-addon-fit to genenetwork2 * gn/packages/genenetwork.scm(genenetwork2) [propagated-inputs]: Add javascript-xterm , javascript-xterm-style and javascript-xterm-addon-fit
2021-11-05gn: genenetwork: Remove unused package inputsBonfaceKilz
2021-11-05gn: genenetwork: Delete dead commentsBonfaceKilz
2021-11-04gn: Update genenetwork3 to 0.0.1-guix-9e0fa5fBonfaceKilz
2021-11-01gn: Add python-pingouinBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pingouin
2021-10-27gn: genenetwork: Add python-deprecatedBonfaceKilz
Only used when deemed necessary.
2021-10-06gn: Update genenetwork3 to 0.0.1-guix-77c274bBonfaceKilz
2021-09-29gn: Add r-wgcna, r-rjson to genenetwork3.Alexander Kabui
* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
2021-08-28Moved packages into past/genenetwork1 and packages/pangenome to reduce chance ofpjotrp
breaking the main genenetwork packages.
2021-08-28Remove golang module loaderpjotrp
2021-08-24genenetwork[23]: updated git checkout and commented out DAG generationPjotr Prins
2021-08-20gn: Add missing importEfraim Flashner
2021-08-18Remove csv-diff from channel.BonfaceKilz
This is already packaged upstream. * gn/packages/genenetwork.scm: Remove "(gn packages golang)" import. * gn/packages/golang.scm: Delete file.
2021-08-16gn: Add toolbar overlay for debugging genenetwork2BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-flask-debugtoolbar
2021-08-16gn: start moving calculated files to build separatelyEfraim Flashner
2021-08-15gn: genenetwork2: Don't hardcode python version.Efraim Flashner
2021-08-12gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"BonfaceKilz
This fixes this error: guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
2021-08-11gn: fix genenetwork2 package definitionEfraim Flashner
2021-08-11fixup genenetwork2Efraim Flashner
2021-08-09gn: Adjust genenetwork2 for removal of python2-genenetwork2Efraim Flashner
2021-08-07python2-genenetwork2: remove unused Python2 version of genenetworkpjotrp
2021-08-05gn: Update genenetwork3 to 0.0.1-guix-487e50eBonfaceKilz
2021-08-03gn: genenetwork3: Add csvdiff as a propagated inputBonfaceKilz
2021-08-02gn: code updatesEfraim Flashner
2021-07-12gn: Update genenetwork3 to 0.0.1-guix-7d22039BonfaceKilz
2021-07-11gn: Add python24-direct.Efraim Flashner
* gn/packages/python24.scm (python24-direct): New variable. * gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add python24-direct.
2021-07-11Added GNU parallel to genenetwork2pjotrp
2021-06-07gn: Update genenetwork3 to 0.0.1-guix-3881b50BonfaceKilz
2021-05-27gn: Update genenetwork3 to 0.0.1-guix-cd08b40BonfaceKilz
2021-05-13gn: Update genenetwork3 to 0.0.1-guix-09f6992BonfaceKilz
2021-05-13genenetwork2: add python-configparserPjotr Prins
2021-05-13gn: Add r-qtl, r-stringi to genenetwork3.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-qtl and r-stringi.
2021-05-12Made python3-genenetwork2 the default!Pjotr Prins
2021-05-12gn: Add r-optparse to genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-optparse
2021-05-10gn: genenetwork: Add genenetwork3 as input.BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add genenetwork3.
2021-05-10gn: genenetwork: Remove racket-minimal from gn2 inputs.BonfaceKilz
* gn/packages/genenetwork.scm [propagated-inputs]: Remove racket-minimal.
2021-05-10gn: genenetwork: Add genenetwork3.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): New variable.
2021-05-10gn: genenetwork: Add autopep8 and pylint to python3-genenetwork2.BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add python-autopep8 and python-pylint.
2021-04-20gn: genetwork: Propagate python-rpy2-nextBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Use python-rpy2-next.
2021-02-05gn1: make run in a containerroot
2021-02-05Move packages to genetwork1 propagated inputsBonfaceKilz
* gn/services/genenetwork.scm: Move some package defs to ... * gn/packages/genenetwork.scm [propagated-inputs]: ... here.
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-05 16:32:33 +0000