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path: root/gn/packages/genenetwork.scm
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2020-08-19gn: Add gfautil.Efraim Flashner
2020-08-18genenetwork1: patch more filesEfraim Flashner
2020-08-18gn: Use local links for genenetwork1.Efraim Flashner
2020-08-10gn: genenetwork2: Add pillow as one of the propagated-inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python2-pillow
2020-08-05gn: python3-genenetwork2: Update package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [source]: Use github source tree to avoid build failures in `setup.py` which used old python 2 syntax. [propagated-inputs]: Use python-wrapper that maps `python3` command to `python`. Remove "python" from inherited propagated input. Remove unittest2 and mock inputs since they are already defined in python3's standard library. [arguments]: Inherit package arguments from genenetwork2 and only update '#phases and '#python args.
2020-08-04gn: python3-genenetwork2: Remove hard coded variablesBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Use a filter to get the lists of packages to delete from the inherited propagated input.
2020-08-04gn: genenetwork2: Remove duplicate python2-scipy inputBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): Remove duplicate propagated-input
2020-08-04gn: python3-genenetwork2: Inherit from genenetwork2BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Rewrite package definiton to inherit from genenetwork2 package.
2020-08-04Merge branch 'build/python3-migration'BonfaceKilz
2020-08-04gn: python3-genenetwork: Rename unittest2 inputBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove duplicate requests inputBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Delete duplicate input
2020-08-04gn: python3-genenetwork2: Remove unnecessary commentsBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove python2-parallelBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork): Remove deprecated package
2020-08-04gn: python3-genenetwork2: Remove python-qtlreaperBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Remove deprecated python2-qtlreaper
2020-08-04gn: python3-genenetwork2: Add new package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Add it. Same as genenetwork2 for now.
2020-08-03gn: Move graphviz-2.26 to guix-pastEfraim Flashner
2020-08-02genenetwork1: Connect to the databaseEfraim Flashner
2020-08-02gn: Update crates for upstream name changesEfraim Flashner
2020-07-26A running genenetworkEfraim Flashner
2020-07-24genenetwork2: rename unittest2 inputBonfaceKilz
2020-07-24genenetwork2: add python2-mock and python-nose2 for easier testingBonfaceKilz
2020-07-24genenetwork2: add python2-coverageBonfaceKilz
2020-07-05gn: Use the guix-past channel.Efraim Flashner
Adjust for python-2.4 being in the guix-past channel.
2020-06-24gn: rust-qtlreaper: use rust-rayon-1BonfaceKilz
Upstream renamed rust-rayon-1.3 to rust-rayon-1
2020-06-16gn: add twint as a dependency to gn2BonfaceKilz
2020-06-11genenetwork1: default to httpd-2.2Efraim Flashner
2020-06-10genenetwork1: Use combo httpd+mod-python packageEfraim Flashner
2020-06-04Merge branch 'master' of ↵BonfaceKilz
http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics
2020-06-04gn(javascript): add jquery-cookie as a dep to gn2BonfaceKilz
2020-06-03Genenetwork1Pjotr Prins
2020-06-03gn(javascript): update javascript deps for gn2BonfaceKilz
Add: - javascript-qtip2 - javascript-d3js - javascript-nvd3 - javascript-bootstrap - javascript-jquery - javascript-zxcvbn-async - javascript-jquery-ui
2020-05-29Merge branch 'master' of ↵BonfaceKilz
http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics
2020-05-29gn: add js dependencies to genenetwork2BonfaceKilz
2020-05-28Re=introduced gunicorn for python2. Please keep it for now.Pjotr Prins
2020-05-28Updating gemma to build on latestPjotr Prins
2020-05-27gn(javascript): update javascript dependencies for gn2BonfaceKilz
2020-05-22Swapping mysql for mariadbPjotr Prins
2020-02-10Updatepjotrp
2020-01-22gn: rust-qtlreaper: Enable tests.Efraim Flashner
2020-01-21gn: Update rust cratesEfraim Flashner
2020-01-19gn: adjust for python-lxml moving modulesEfraim Flashner
2020-01-16gn: Add genenetwork1Efraim Flashner
2019-12-22Revert "Removed python-science and crates-io to build with latest guix"Efraim Flashner
This reverts commit adbf2a07ea0274f718b60ef5ba3a7786360552d1.
2019-12-22Removed python-science and crates-io to build with latest guixpjotrp
2019-12-03gn: Adjust import for upstream changesEfraim Flashner
2019-11-10gn: Update dependencies for rust-qtlreaper.Efraim Flashner
* gn/packages/crates.io.scm (rust-arrayvec-0.4): Update to 0.4.12. (rust-either-1.5): Update to 1.5.3. (rust-unicode-segmentation-1.6): New variable. * gn/packages/genenetwork.scm (rust-qtlreaper)[inputs]: Remove rust-unicode-segmentation-1.3, add rust-unicode-segmentation-1.6.
2019-10-28gn: rust-qtlreaper: Disable tests.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Disable tests. Add custom phase to update the expected test results with the new library versions.
2019-10-27gn: Adjust to upstream crate changes.Efraim Flashner
* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data.
2019-10-18fixup repo for guix pullEfraim Flashner
* gn/packages/cwl.scm: GN's python-setuptools renamed to python-setuptools-old,re-enable import. * gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace search-bootstrap-binary with bootstrap-executable.
2019-10-18gn: rust-qtlreaper: Manually provide dependencies.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually provide all the crates needed to build the package. * gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all inputs for all crates.
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