| Age | Commit message (Expand) | Author |
|---|
| 2022-02-09 | gn: genenetwork2: Add python-ijson.•••* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-ijson.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander Kabui |
| 2022-02-09 | gn: genenetwork3: Add r-ctl.•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
r-ctl.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander Kabui |
| 2022-01-26 | gn: genenetwork: Disable tests on python-seaborn.•••* gn/packages/genenetwork.scm (python-seaborn-without-tests,
python-pingouin-with-working-python-seaborn): New variables.
(genenetwork3)[propagated-inputs]: Replace python-pingouin with
python-pingouin-with-working-python-seaborn.
| Arun Isaac |
| 2022-01-06 | gn: genenetwork: Add diffutils•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Add diffutils.
| BonfaceKilz |
| 2022-01-05 | Revert "gn: genenetwork: Add pudb"•••This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra
dependency by running something like:
```
guix shell -L /home/bonface/projects/guix-bioinformatics \
-L /home/bonface/projects/guix-past/modules -C \
-D pudb -f guix.scm
```
| BonfaceKilz |
| 2022-01-05 | gn: genenetwork: Add pudb•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Add pudb for trouble-shooting purposes.
| BonfaceKilz |
| 2022-01-01 | genenetwork3: updated and disabled tests | Pjotr Prins |
| 2022-01-01 | genenetwork2: put a hack in to fix failing build. Please amend | Pjotr Prins |
| 2021-12-29 | Fix typo in import of (gnu packages textutils).•••* gn/packages/genenetwork.scm: Import (gnu packages textutils),
not (gn packages textutils).
| Arun Isaac |
| 2021-12-21 | gn/packages/genenetwork.scm: Use csvdiff from textutils.•••* gn/packages/genenetwork.scm (genenetwork2): Use updated version of csvdiff
from textutils.
| BonfaceKilz |
| 2021-12-09 | gn: genenetwork: Define version using git-version.•••Also, semantic versioning starts from 0.1.0, not 0.0.1.
* gn/packages/genenetwork.scm (genenetwork3)[version]: Use
git-version.
| Arun Isaac |
| 2021-12-09 | gn: genenetwork: Reorganize inputs.•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Remove python-sqlalchemy-stubs. Add python-sparqlwrapper and
rust-qtlreaper. Sort all inputs.
| Arun Isaac |
| 2021-11-17 | gn: genenetwork: Add javascript-xterm , javascript-xterm-style, javascript-xt...••• * gn/packages/genenetwork.scm(genenetwork2) [propagated-inputs]: Add javascript-xterm , javascript-xterm-style and javascript-xterm-addon-fit
| Alexander Kabui |
| 2021-11-05 | gn: genenetwork: Remove unused package inputs | BonfaceKilz |
| 2021-11-05 | gn: genenetwork: Delete dead comments | BonfaceKilz |
| 2021-11-04 | gn: Update genenetwork3 to 0.0.1-guix-9e0fa5f | BonfaceKilz |
| 2021-11-01 | gn: Add python-pingouin•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
python-pingouin
| BonfaceKilz |
| 2021-10-27 | gn: genenetwork: Add python-deprecated•••Only used when deemed necessary.
| BonfaceKilz |
| 2021-10-06 | gn: Update genenetwork3 to 0.0.1-guix-77c274b | BonfaceKilz |
| 2021-09-29 | gn: Add r-wgcna, r-rjson to genenetwork3.•••* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
| Alexander Kabui |
| 2021-08-28 | Moved packages into past/genenetwork1 and packages/pangenome to reduce chance of•••breaking the main genenetwork packages.
| pjotrp |
| 2021-08-28 | Remove golang module loader | pjotrp |
| 2021-08-24 | genenetwork[23]: updated git checkout and commented out DAG generation | Pjotr Prins |
| 2021-08-20 | gn: Add missing import | Efraim Flashner |
| 2021-08-18 | Remove csv-diff from channel.•••This is already packaged upstream.
* gn/packages/genenetwork.scm: Remove "(gn packages golang)" import.
* gn/packages/golang.scm: Delete file.
| BonfaceKilz |
| 2021-08-16 | gn: Add toolbar overlay for debugging genenetwork2•••* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-flask-debugtoolbar
| BonfaceKilz |
| 2021-08-16 | gn: start moving calculated files to build separately | Efraim Flashner |
| 2021-08-15 | gn: genenetwork2: Don't hardcode python version. | Efraim Flashner |
| 2021-08-12 | gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"•••This fixes this error:
guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
| BonfaceKilz |
| 2021-08-11 | gn: fix genenetwork2 package definition | Efraim Flashner |
| 2021-08-11 | fixup genenetwork2 | Efraim Flashner |
| 2021-08-09 | gn: Adjust genenetwork2 for removal of python2-genenetwork2 | Efraim Flashner |
| 2021-08-07 | python2-genenetwork2: remove unused Python2 version of genenetwork | pjotrp |
| 2021-08-05 | gn: Update genenetwork3 to 0.0.1-guix-487e50e | BonfaceKilz |
| 2021-08-03 | gn: genenetwork3: Add csvdiff as a propagated input | BonfaceKilz |
| 2021-08-02 | gn: code updates | Efraim Flashner |
| 2021-07-12 | gn: Update genenetwork3 to 0.0.1-guix-7d22039 | BonfaceKilz |
| 2021-07-11 | gn: Add python24-direct.•••* gn/packages/python24.scm (python24-direct): New variable.
* gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add
python24-direct.
| Efraim Flashner |
| 2021-07-11 | Added GNU parallel to genenetwork2 | pjotrp |
| 2021-06-07 | gn: Update genenetwork3 to 0.0.1-guix-3881b50 | BonfaceKilz |
| 2021-05-27 | gn: Update genenetwork3 to 0.0.1-guix-cd08b40 | BonfaceKilz |
| 2021-05-13 | gn: Update genenetwork3 to 0.0.1-guix-09f6992 | BonfaceKilz |
| 2021-05-13 | genenetwork2: add python-configparser | Pjotr Prins |
| 2021-05-13 | gn: Add r-qtl, r-stringi to genenetwork3.•••* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add
r-qtl and r-stringi.
| BonfaceKilz |
| 2021-05-12 | Made python3-genenetwork2 the default! | Pjotr Prins |
| 2021-05-12 | gn: Add r-optparse to genenetwork3•••* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add
r-optparse
| BonfaceKilz |
| 2021-05-10 | gn: genenetwork: Add genenetwork3 as input.•••* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add
genenetwork3.
| BonfaceKilz |
| 2021-05-10 | gn: genenetwork: Remove racket-minimal from gn2 inputs.•••* gn/packages/genenetwork.scm [propagated-inputs]: Remove racket-minimal.
| BonfaceKilz |
| 2021-05-10 | gn: genenetwork: Add genenetwork3.•••* gn/packages/genenetwork.scm (genenetwork3): New variable.
| BonfaceKilz |
| 2021-05-10 | gn: genenetwork: Add autopep8 and pylint to python3-genenetwork2.•••* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add
python-autopep8 and python-pylint.
| BonfaceKilz |
