Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-11-04 | gn: Update genenetwork3 to 0.0.1-guix-9e0fa5f | BonfaceKilz | |
2021-11-01 | gn: Add python-pingouin | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pingouin | |||
2021-10-27 | gn: genenetwork: Add python-deprecated | BonfaceKilz | |
Only used when deemed necessary. | |||
2021-10-06 | gn: Update genenetwork3 to 0.0.1-guix-77c274b | BonfaceKilz | |
2021-09-29 | gn: Add r-wgcna, r-rjson to genenetwork3. | Alexander Kabui | |
* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson | |||
2021-08-28 | Moved packages into past/genenetwork1 and packages/pangenome to reduce chance of | pjotrp | |
breaking the main genenetwork packages. | |||
2021-08-28 | Remove golang module loader | pjotrp | |
2021-08-24 | genenetwork[23]: updated git checkout and commented out DAG generation | Pjotr Prins | |
2021-08-20 | gn: Add missing import | Efraim Flashner | |
2021-08-18 | Remove csv-diff from channel. | BonfaceKilz | |
This is already packaged upstream. * gn/packages/genenetwork.scm: Remove "(gn packages golang)" import. * gn/packages/golang.scm: Delete file. | |||
2021-08-16 | gn: Add toolbar overlay for debugging genenetwork2 | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-flask-debugtoolbar | |||
2021-08-16 | gn: start moving calculated files to build separately | Efraim Flashner | |
2021-08-15 | gn: genenetwork2: Don't hardcode python version. | Efraim Flashner | |
2021-08-12 | gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments" | BonfaceKilz | |
This fixes this error: guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper) | |||
2021-08-11 | gn: fix genenetwork2 package definition | Efraim Flashner | |
2021-08-11 | fixup genenetwork2 | Efraim Flashner | |
2021-08-09 | gn: Adjust genenetwork2 for removal of python2-genenetwork2 | Efraim Flashner | |
2021-08-07 | python2-genenetwork2: remove unused Python2 version of genenetwork | pjotrp | |
2021-08-05 | gn: Update genenetwork3 to 0.0.1-guix-487e50e | BonfaceKilz | |
2021-08-03 | gn: genenetwork3: Add csvdiff as a propagated input | BonfaceKilz | |
2021-08-02 | gn: code updates | Efraim Flashner | |
2021-07-12 | gn: Update genenetwork3 to 0.0.1-guix-7d22039 | BonfaceKilz | |
2021-07-11 | gn: Add python24-direct. | Efraim Flashner | |
* gn/packages/python24.scm (python24-direct): New variable. * gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add python24-direct. | |||
2021-07-11 | Added GNU parallel to genenetwork2 | pjotrp | |
2021-06-07 | gn: Update genenetwork3 to 0.0.1-guix-3881b50 | BonfaceKilz | |
2021-05-27 | gn: Update genenetwork3 to 0.0.1-guix-cd08b40 | BonfaceKilz | |
2021-05-13 | gn: Update genenetwork3 to 0.0.1-guix-09f6992 | BonfaceKilz | |
2021-05-13 | genenetwork2: add python-configparser | Pjotr Prins | |
2021-05-13 | gn: Add r-qtl, r-stringi to genenetwork3. | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-qtl and r-stringi. | |||
2021-05-12 | Made python3-genenetwork2 the default! | Pjotr Prins | |
2021-05-12 | gn: Add r-optparse to genenetwork3 | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-optparse | |||
2021-05-10 | gn: genenetwork: Add genenetwork3 as input. | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add genenetwork3. | |||
2021-05-10 | gn: genenetwork: Remove racket-minimal from gn2 inputs. | BonfaceKilz | |
* gn/packages/genenetwork.scm [propagated-inputs]: Remove racket-minimal. | |||
2021-05-10 | gn: genenetwork: Add genenetwork3. | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork3): New variable. | |||
2021-05-10 | gn: genenetwork: Add autopep8 and pylint to python3-genenetwork2. | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add python-autopep8 and python-pylint. | |||
2021-04-20 | gn: genetwork: Propagate python-rpy2-next | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Use python-rpy2-next. | |||
2021-02-05 | gn1: make run in a container | root | |
2021-02-05 | Move packages to genetwork1 propagated inputs | BonfaceKilz | |
* gn/services/genenetwork.scm: Move some package defs to ... * gn/packages/genenetwork.scm [propagated-inputs]: ... here. | |||
2021-02-03 | gn: javascript: Add javascript-font-awesome | Alexander Kabui | |
* gn/packages/javascript.scm: (javascript-font-awesome): New package. * gn/packages/javascript.scm: (genenetwork2) [propagated-inputs]: Add javascript-font-awesome. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> | |||
2021-01-31 | gn: javascript: Replace javascript-zxcvbn-async with javascript-zxcvbn | Alexander Kabui | |
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> | |||
2021-01-12 | gn: genenetwork1: Create "useralt" and replace "user" with it | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork1): [arguments]: In 'changes-for-deployed-service, copy "web/webqtl/user" to "web/webqtl/useralt" and replace how "user" is imported in "web/webqtl/main.py" | |||
2020-12-15 | gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamed | Efraim Flashner | |
2020-12-06 | gn: python3-genenetwork2: Generate svg graph from python3-package | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): [native-inputs]: Add graphviz. [arguments]{generate-dag-svg-file}: New phase. | |||
2020-12-06 | gn: python3-genenetwork2: Remove unnecessary begin form | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments] {generate-graph}: Remove begin form. | |||
2020-12-04 | gn: python3-genenetwork2: Generate graph from python3-package | BonfaceKilz | |
* gn/packages/genenetwork.scm: Add new #:use-modules: (guix graph) (guix scripts graph) (guix store) (python3-genenetwork2)[arguments]{generate-graph}: New phase after install that uses d3js to generate a new graph which uses d3js as a backend. | |||
2020-12-04 | gn: python3-genenetwork2: Add package link in generated deps file | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add link to "genenetwork.scm" file. | |||
2020-12-02 | gn: python3-genenetwork2: Generate static dependencies file | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add new phase after "install" that generates a "DEPENDENCY.md" file which will be displayed in the gn2 web interface. | |||
2020-11-20 | gn: genenetwork2: Remove vim from propagated inputs | BonfaceKilz | |
* gn/packages/genenetwork.scm (genenetwork2): [propagated-inputs]: Remove vim. Right now, building vim fails, thereby causing python3-genenetwork2 to fail. | |||
2020-11-20 | gn: python3-genenetwork: Replace python-mistune with python-markdown | BonfaceKilz | |
2020-11-19 | gn: python3-genenetwork2: Comment out python-flask-socketio | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Comment out python-flask-socketio. Causes build on Penguin2 to fail. |