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2020-05-22Swapping mysql for mariadbPjotr Prins
2020-02-10Updatepjotrp
2020-01-22gn: rust-qtlreaper: Enable tests.Efraim Flashner
2020-01-21gn: Update rust cratesEfraim Flashner
2020-01-19gn: adjust for python-lxml moving modulesEfraim Flashner
2020-01-16gn: Add genenetwork1Efraim Flashner
2019-12-22Revert "Removed python-science and crates-io to build with latest guix"Efraim Flashner
This reverts commit adbf2a07ea0274f718b60ef5ba3a7786360552d1.
2019-12-22Removed python-science and crates-io to build with latest guixpjotrp
2019-12-03gn: Adjust import for upstream changesEfraim Flashner
2019-11-10gn: Update dependencies for rust-qtlreaper.Efraim Flashner
* gn/packages/crates.io.scm (rust-arrayvec-0.4): Update to 0.4.12. (rust-either-1.5): Update to 1.5.3. (rust-unicode-segmentation-1.6): New variable. * gn/packages/genenetwork.scm (rust-qtlreaper)[inputs]: Remove rust-unicode-segmentation-1.3, add rust-unicode-segmentation-1.6.
2019-10-28gn: rust-qtlreaper: Disable tests.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Disable tests. Add custom phase to update the expected test results with the new library versions.
2019-10-27gn: Adjust to upstream crate changes.Efraim Flashner
* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data.
2019-10-18fixup repo for guix pullEfraim Flashner
* gn/packages/cwl.scm: GN's python-setuptools renamed to python-setuptools-old,re-enable import. * gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace search-bootstrap-binary with bootstrap-executable.
2019-10-18gn: rust-qtlreaper: Manually provide dependencies.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually provide all the crates needed to build the package. * gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all inputs for all crates.
2019-10-06gn: rust-qtlreaper: Update test results.core-updatesEfraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Add custom phase to update the expected test results with the new library versions.
2019-09-23gn: genenetwork2: Use packaged javascript-colorbox.Efraim Flashner
* gn/packages/genenetwork.scm (genenetwork2)[inputs]: Add javascript-colorbox's source. [arguments]: Replace vendored javascript-colorbox with our own.
2019-09-06Add link to sourcesPjotr Prins
2019-09-06Cleaning up genenetwork2 build.Pjotr Prins
Remove pylmm and r-phewas. Added rust-qtlreaper Fixed python-setuptools warning
2019-09-05Fix genenetwork2Pjotr Prins
2019-09-05Disable small files and rpy2 tests (one fails)Pjotr Prins
2019-09-05ReaperPjotr Prins
2019-08-28gn: genenetwork.scm: Clean up module imports.Efraim Flashner
2019-08-28gn: genenetwork.scm: Fix indentation.Efraim Flashner
2019-08-26gn: rust-qtlreaper: Update to 0.1.4.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper): Update to 0.1.4. [arguments]: Add rust-ndarray to cargo-inputs. * gn/packages/crates-io.scm: Add many new crates.
2019-08-04gn: rust-qtlreaper: Update with upstream changes.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Remove custom phases.
2019-07-29gn: Add rust-qtlreaper and dependencies.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper): New variable. * gn/packages/crates-io.scm (~300 packages): New variables.
2019-07-04gn: Add python24-qtlreaper.Efraim Flashner
2019-05-31Use module (gnu packages cran). Change to python2-htmlgenMuriithi Frederick Muriuki
* Use module (gnu packages cran) to get access to r-wgcna * Change the dependency to python2-htmlgen which is the newer package supporting both python2 and python3
2019-03-13Remove commentsMuriithi Frederick Muriuki
* Remove comments referring to python2-piddle and python2-pil1 dependencies.
2019-02-18Add (gnu packages python-xyz) module.Muriithi Frederick Muriuki
* To find definitions of some packages like python2-pillow and python2-setuptools, there was need to use the (gnu packages python-xyz) module. This commit imports that module.
2019-01-24gn: Add new dependency.Muriithi Frederick Muriuki
* gn/packages/genenetwork2.scm (python-pillow): New dependency.
2018-12-03gn: Add dependencyMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (python-pillow): Add new dependency
2018-10-16Updated gemma and openblasPjotr Prins
2018-10-14ldc: use ldc from mainlinepjotrp
2018-06-28Update reaper commitMuriithi Frederick Muriuki
2018-06-21Add python-reaperMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (python-reaper): New package.
2018-06-11Remove PhewasMuriithi Frederick Muriuki
* Phewas depends on an R package that no longer exists at the given url. This breaks the install. Phewas is also not currently used in genenetwork3.
2018-04-08Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformaticsMuriithi Frederick Muriuki
2018-04-06Oops, wrong packagePjotr Prins
2018-04-06Two JS packagespjotrp
2018-04-05Added cytoscape-js packagepjotrp
2018-04-04gn: Add package dependenciesMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (genenetwork3): - Add dependency python-cssselect - Add dependency python-htmlgen
2018-03-26gn: Update genenetwork3 definitionMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (genenetwork3): Update package definition. - Deactivate all packages that need Python 2 - Change the source uri for the package definition - Change the commit hash - Change the sha256 hash - Comment out the processing for pylmmcmd in the 'fix-paths' phase
2018-03-22Added qtlreaper for Python3fredpjotrp
2018-03-21gn: genenetwork3: Add new packageMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (genenetwork3): Add a new package
2018-03-20Adding GN python packages for testingpjotrp
2018-02-15Using elasticsearch latestpjotrp
2018-02-10Added requests and mechanize for testingPjotr Prins
2018-01-30Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticsPjotr Prins
2018-01-30Openblas universalPjotr Prins
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