Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-08-04 | gn: python3-genenetwork2: Remove python-qtlreaper | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): Remove deprecated python2-qtlreaper | |||
2020-08-04 | gn: python3-genenetwork2: Add new package definition | BonfaceKilz | |
* gn/packages/genenetwork.scm (python3-genenetwork2): Add it. Same as genenetwork2 for now. | |||
2020-07-05 | gn: Use the guix-past channel. | Efraim Flashner | |
Adjust for python-2.4 being in the guix-past channel. | |||
2020-06-24 | gn: rust-qtlreaper: use rust-rayon-1 | BonfaceKilz | |
Upstream renamed rust-rayon-1.3 to rust-rayon-1 | |||
2020-06-16 | gn: add twint as a dependency to gn2 | BonfaceKilz | |
2020-06-11 | genenetwork1: default to httpd-2.2 | Efraim Flashner | |
2020-06-10 | genenetwork1: Use combo httpd+mod-python package | Efraim Flashner | |
2020-06-04 | Merge branch 'master' of ↵ | BonfaceKilz | |
http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics | |||
2020-06-04 | gn(javascript): add jquery-cookie as a dep to gn2 | BonfaceKilz | |
2020-06-03 | Genenetwork1 | Pjotr Prins | |
2020-06-03 | gn(javascript): update javascript deps for gn2 | BonfaceKilz | |
Add: - javascript-qtip2 - javascript-d3js - javascript-nvd3 - javascript-bootstrap - javascript-jquery - javascript-zxcvbn-async - javascript-jquery-ui | |||
2020-05-29 | Merge branch 'master' of ↵ | BonfaceKilz | |
http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics | |||
2020-05-29 | gn: add js dependencies to genenetwork2 | BonfaceKilz | |
2020-05-28 | Re=introduced gunicorn for python2. Please keep it for now. | Pjotr Prins | |
2020-05-28 | Updating gemma to build on latest | Pjotr Prins | |
2020-05-27 | gn(javascript): update javascript dependencies for gn2 | BonfaceKilz | |
2020-05-22 | Swapping mysql for mariadb | Pjotr Prins | |
2020-02-10 | Update | pjotrp | |
2020-01-22 | gn: rust-qtlreaper: Enable tests. | Efraim Flashner | |
2020-01-21 | gn: Update rust crates | Efraim Flashner | |
2020-01-19 | gn: adjust for python-lxml moving modules | Efraim Flashner | |
2020-01-16 | gn: Add genenetwork1 | Efraim Flashner | |
2019-12-22 | Revert "Removed python-science and crates-io to build with latest guix" | Efraim Flashner | |
This reverts commit adbf2a07ea0274f718b60ef5ba3a7786360552d1. | |||
2019-12-22 | Removed python-science and crates-io to build with latest guix | pjotrp | |
2019-12-03 | gn: Adjust import for upstream changes | Efraim Flashner | |
2019-11-10 | gn: Update dependencies for rust-qtlreaper. | Efraim Flashner | |
* gn/packages/crates.io.scm (rust-arrayvec-0.4): Update to 0.4.12. (rust-either-1.5): Update to 1.5.3. (rust-unicode-segmentation-1.6): New variable. * gn/packages/genenetwork.scm (rust-qtlreaper)[inputs]: Remove rust-unicode-segmentation-1.3, add rust-unicode-segmentation-1.6. | |||
2019-10-28 | gn: rust-qtlreaper: Disable tests. | Efraim Flashner | |
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Disable tests. Add custom phase to update the expected test results with the new library versions. | |||
2019-10-27 | gn: Adjust to upstream crate changes. | Efraim Flashner | |
* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data. | |||
2019-10-18 | fixup repo for guix pull | Efraim Flashner | |
* gn/packages/cwl.scm: GN's python-setuptools renamed to python-setuptools-old,re-enable import. * gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace search-bootstrap-binary with bootstrap-executable. | |||
2019-10-18 | gn: rust-qtlreaper: Manually provide dependencies. | Efraim Flashner | |
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually provide all the crates needed to build the package. * gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all inputs for all crates. | |||
2019-10-06 | gn: rust-qtlreaper: Update test results.core-updates | Efraim Flashner | |
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Add custom phase to update the expected test results with the new library versions. | |||
2019-09-23 | gn: genenetwork2: Use packaged javascript-colorbox. | Efraim Flashner | |
* gn/packages/genenetwork.scm (genenetwork2)[inputs]: Add javascript-colorbox's source. [arguments]: Replace vendored javascript-colorbox with our own. | |||
2019-09-06 | Add link to sources | Pjotr Prins | |
2019-09-06 | Cleaning up genenetwork2 build. | Pjotr Prins | |
Remove pylmm and r-phewas. Added rust-qtlreaper Fixed python-setuptools warning | |||
2019-09-05 | Fix genenetwork2 | Pjotr Prins | |
2019-09-05 | Disable small files and rpy2 tests (one fails) | Pjotr Prins | |
2019-09-05 | Reaper | Pjotr Prins | |
2019-08-28 | gn: genenetwork.scm: Clean up module imports. | Efraim Flashner | |
2019-08-28 | gn: genenetwork.scm: Fix indentation. | Efraim Flashner | |
2019-08-26 | gn: rust-qtlreaper: Update to 0.1.4. | Efraim Flashner | |
* gn/packages/genenetwork.scm (rust-qtlreaper): Update to 0.1.4. [arguments]: Add rust-ndarray to cargo-inputs. * gn/packages/crates-io.scm: Add many new crates. | |||
2019-08-04 | gn: rust-qtlreaper: Update with upstream changes. | Efraim Flashner | |
* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Remove custom phases. | |||
2019-07-29 | gn: Add rust-qtlreaper and dependencies. | Efraim Flashner | |
* gn/packages/genenetwork.scm (rust-qtlreaper): New variable. * gn/packages/crates-io.scm (~300 packages): New variables. | |||
2019-07-04 | gn: Add python24-qtlreaper. | Efraim Flashner | |
2019-05-31 | Use module (gnu packages cran). Change to python2-htmlgen | Muriithi Frederick Muriuki | |
* Use module (gnu packages cran) to get access to r-wgcna * Change the dependency to python2-htmlgen which is the newer package supporting both python2 and python3 | |||
2019-03-13 | Remove comments | Muriithi Frederick Muriuki | |
* Remove comments referring to python2-piddle and python2-pil1 dependencies. | |||
2019-02-18 | Add (gnu packages python-xyz) module. | Muriithi Frederick Muriuki | |
* To find definitions of some packages like python2-pillow and python2-setuptools, there was need to use the (gnu packages python-xyz) module. This commit imports that module. | |||
2019-01-24 | gn: Add new dependency. | Muriithi Frederick Muriuki | |
* gn/packages/genenetwork2.scm (python-pillow): New dependency. | |||
2018-12-03 | gn: Add dependency | Muriithi Frederick Muriuki | |
* gn/packages/genenetwork.scm (python-pillow): Add new dependency | |||
2018-10-16 | Updated gemma and openblas | Pjotr Prins | |
2018-10-14 | ldc: use ldc from mainline | pjotrp | |