aboutsummaryrefslogtreecommitdiff
path: root/gn/packages/genenetwork.scm
AgeCommit message (Expand)Author
2020-06-24gn: rust-qtlreaper: use rust-rayon-1...Upstream renamed rust-rayon-1.3 to rust-rayon-1 BonfaceKilz
2020-06-16gn: add twint as a dependency to gn2BonfaceKilz
2020-06-11genenetwork1: default to httpd-2.2Efraim Flashner
2020-06-10genenetwork1: Use combo httpd+mod-python packageEfraim Flashner
2020-06-04Merge branch 'master' of http://git.genenetwork.org/guix-bioinformatics/guix-...BonfaceKilz
2020-06-04gn(javascript): add jquery-cookie as a dep to gn2BonfaceKilz
2020-06-03Genenetwork1Pjotr Prins
2020-06-03gn(javascript): update javascript deps for gn2...Add: - javascript-qtip2 - javascript-d3js - javascript-nvd3 - javascript-bootstrap - javascript-jquery - javascript-zxcvbn-async - javascript-jquery-ui BonfaceKilz
2020-05-29Merge branch 'master' of http://git.genenetwork.org/guix-bioinformatics/guix-...BonfaceKilz
2020-05-29gn: add js dependencies to genenetwork2BonfaceKilz
2020-05-28Re=introduced gunicorn for python2. Please keep it for now.Pjotr Prins
2020-05-28Updating gemma to build on latestPjotr Prins
2020-05-27gn(javascript): update javascript dependencies for gn2BonfaceKilz
2020-05-22Swapping mysql for mariadbPjotr Prins
2020-02-10Updatepjotrp
2020-01-22gn: rust-qtlreaper: Enable tests.Efraim Flashner
2020-01-21gn: Update rust cratesEfraim Flashner
2020-01-19gn: adjust for python-lxml moving modulesEfraim Flashner
2020-01-16gn: Add genenetwork1Efraim Flashner
2019-12-22Revert "Removed python-science and crates-io to build with latest guix"...This reverts commit adbf2a07ea0274f718b60ef5ba3a7786360552d1. Efraim Flashner
2019-12-22Removed python-science and crates-io to build with latest guixpjotrp
2019-12-03gn: Adjust import for upstream changesEfraim Flashner
2019-11-10gn: Update dependencies for rust-qtlreaper....* gn/packages/crates.io.scm (rust-arrayvec-0.4): Update to 0.4.12. (rust-either-1.5): Update to 1.5.3. (rust-unicode-segmentation-1.6): New variable. * gn/packages/genenetwork.scm (rust-qtlreaper)[inputs]: Remove rust-unicode-segmentation-1.3, add rust-unicode-segmentation-1.6. Efraim Flashner
2019-10-28gn: rust-qtlreaper: Disable tests....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Disable tests. Add custom phase to update the expected test results with the new library versions. Efraim Flashner
2019-10-27gn: Adjust to upstream crate changes....* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data. Efraim Flashner
2019-10-18fixup repo for guix pull...* gn/packages/cwl.scm: GN's python-setuptools renamed to python-setuptools-old,re-enable import. * gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace search-bootstrap-binary with bootstrap-executable. Efraim Flashner
2019-10-18gn: rust-qtlreaper: Manually provide dependencies....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually provide all the crates needed to build the package. * gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all inputs for all crates. Efraim Flashner
2019-10-06gn: rust-qtlreaper: Update test results....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Add custom phase to update the expected test results with the new library versions. core-updatesEfraim Flashner
2019-09-23gn: genenetwork2: Use packaged javascript-colorbox....* gn/packages/genenetwork.scm (genenetwork2)[inputs]: Add javascript-colorbox's source. [arguments]: Replace vendored javascript-colorbox with our own. Efraim Flashner
2019-09-06Add link to sourcesPjotr Prins
2019-09-06Cleaning up genenetwork2 build....Remove pylmm and r-phewas. Added rust-qtlreaper Fixed python-setuptools warning Pjotr Prins
2019-09-05Fix genenetwork2Pjotr Prins
2019-09-05Disable small files and rpy2 tests (one fails)Pjotr Prins
2019-09-05ReaperPjotr Prins
2019-08-28gn: genenetwork.scm: Clean up module imports.Efraim Flashner
2019-08-28gn: genenetwork.scm: Fix indentation.Efraim Flashner
2019-08-26gn: rust-qtlreaper: Update to 0.1.4....* gn/packages/genenetwork.scm (rust-qtlreaper): Update to 0.1.4. [arguments]: Add rust-ndarray to cargo-inputs. * gn/packages/crates-io.scm: Add many new crates. Efraim Flashner
2019-08-04gn: rust-qtlreaper: Update with upstream changes....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Remove custom phases. Efraim Flashner
2019-07-29gn: Add rust-qtlreaper and dependencies....* gn/packages/genenetwork.scm (rust-qtlreaper): New variable. * gn/packages/crates-io.scm (~300 packages): New variables. Efraim Flashner
2019-07-04gn: Add python24-qtlreaper.Efraim Flashner
2019-05-31Use module (gnu packages cran). Change to python2-htmlgen...* Use module (gnu packages cran) to get access to r-wgcna * Change the dependency to python2-htmlgen which is the newer package supporting both python2 and python3 Muriithi Frederick Muriuki
2019-03-13Remove comments...* Remove comments referring to python2-piddle and python2-pil1 dependencies. Muriithi Frederick Muriuki
2019-02-18Add (gnu packages python-xyz) module....* To find definitions of some packages like python2-pillow and python2-setuptools, there was need to use the (gnu packages python-xyz) module. This commit imports that module. Muriithi Frederick Muriuki
2019-01-24gn: Add new dependency....* gn/packages/genenetwork2.scm (python-pillow): New dependency. Muriithi Frederick Muriuki
2018-12-03gn: Add dependency...* gn/packages/genenetwork.scm (python-pillow): Add new dependency Muriithi Frederick Muriuki
2018-10-16Updated gemma and openblasPjotr Prins
2018-10-14ldc: use ldc from mainlinepjotrp
2018-06-28Update reaper commitMuriithi Frederick Muriuki
2018-06-21Add python-reaper...* gn/packages/genenetwork.scm (python-reaper): New package. Muriithi Frederick Muriuki
2018-06-11Remove Phewas...* Phewas depends on an R package that no longer exists at the given url. This breaks the install. Phewas is also not currently used in genenetwork3. Muriithi Frederick Muriuki
generated by cgit v1.2.3 (git 2.46.2) at 2024-12-05 02:45:05 +0000