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path: root/gn/packages/genenetwork.scm
AgeCommit message (Expand)Author
2020-12-15gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamedEfraim Flashner
2020-12-06gn: python3-genenetwork2: Generate svg graph from python3-package...* gn/packages/genenetwork.scm (python3-genenetwork2): [native-inputs]: Add graphviz. [arguments]{generate-dag-svg-file}: New phase. BonfaceKilz
2020-12-06gn: python3-genenetwork2: Remove unnecessary begin form...* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments] {generate-graph}: Remove begin form. BonfaceKilz
2020-12-04gn: python3-genenetwork2: Generate graph from python3-package...* gn/packages/genenetwork.scm: Add new #:use-modules: (guix graph) (guix scripts graph) (guix store) (python3-genenetwork2)[arguments]{generate-graph}: New phase after install that uses d3js to generate a new graph which uses d3js as a backend. BonfaceKilz
2020-12-04gn: python3-genenetwork2: Add package link in generated deps file...* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add link to "genenetwork.scm" file. BonfaceKilz
2020-12-02gn: python3-genenetwork2: Generate static dependencies file...* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add new phase after "install" that generates a "DEPENDENCY.md" file which will be displayed in the gn2 web interface. BonfaceKilz
2020-11-20gn: genenetwork2: Remove vim from propagated inputs...* gn/packages/genenetwork.scm (genenetwork2): [propagated-inputs]: Remove vim. Right now, building vim fails, thereby causing python3-genenetwork2 to fail. BonfaceKilz
2020-11-20gn: python3-genenetwork: Replace python-mistune with python-markdownBonfaceKilz
2020-11-19gn: python3-genenetwork2: Comment out python-flask-socketio...* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Comment out python-flask-socketio. Causes build on Penguin2 to fail. BonfaceKilz
2020-11-17gn: python3-genenetwork2: Add python-flask-socketio...* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add python-flask-socketio. BonfaceKilz
2020-11-16gn: python3-genenetwork2: Add javascript-ckeditor...* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add javascript-ckeditor. BonfaceKilz
2020-11-14gn: python3-genenetwork2: Add python-rdflibBonfaceKilz
2020-11-03gn: python3-genenetwork2: Add python-beautifulsoup4...* gn/packages/genenetwork.scm [propagated-inputs]: New input. BonfaceKilz
2020-10-31gn: python3-genenetwork2: Add python-mistune as an input...* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: New input. BonfaceKilz
2020-10-31gn: Delete genenetwork3 package...* gn/packages/genenetwork.scm (genenetwork3): Delete it. The python3 version of genenetwork2 is already packaged as python3-genenetwork2. BonfaceKilz
2020-10-08gn: python3-genenetwork2: Update python-rpy2 inputBonfaceKilz
2020-09-23gn: Add python2-mysqlclient.Efraim Flashner
2020-09-23genenetwork1: Update package and serviceEfraim Flashner
2020-09-14gn: adjust to package movementsEfraim Flashner
2020-09-03gn: Provide genotypes folder in container.Efraim Flashner
2020-09-03python24-qtlreaper: Update to 1.11-gn1.442c217....Also re-indent. Efraim Flashner
2020-09-03move python24-mysqlclient to 1.2.3.Efraim Flashner
2020-08-31gn: python3-genenetwork2: Propagate python-mypyBonfaceKilz
2020-08-28Add racket to genenetwork2pjotrp
2020-08-28Remove unused packagespjotrp
2020-08-26updatesEfraim Flashner
2020-08-20gn: python3-genenetwork2: Propagate python-rpy2...* gn/packages/genenetwork.scm: (python3-genenetwork2)[propagated-inputs]: Add python-rpy2 BonfaceKilz
2020-08-19gn: Add gfautil.Efraim Flashner
2020-08-18genenetwork1: patch more filesEfraim Flashner
2020-08-18gn: Use local links for genenetwork1.Efraim Flashner
2020-08-10gn: genenetwork2: Add pillow as one of the propagated-inputs...* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python2-pillow BonfaceKilz
2020-08-05gn: python3-genenetwork2: Update package definition...* gn/packages/genenetwork.scm (python3-genenetwork2): [source]: Use github source tree to avoid build failures in `setup.py` which used old python 2 syntax. [propagated-inputs]: Use python-wrapper that maps `python3` command to `python`. Remove "python" from inherited propagated input. Remove unittest2 and mock inputs since they are already defined in python3's standard library. [arguments]: Inherit package arguments from genenetwork2 and only update '#phases and '#python args. BonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove hard coded variables...* gn/packages/genenetwork.scm (python3-genenetwork2): Use a filter to get the lists of packages to delete from the inherited propagated input. BonfaceKilz
2020-08-04gn: genenetwork2: Remove duplicate python2-scipy input...* gn/packages/genenetwork.scm (genenetwork2): Remove duplicate propagated-input BonfaceKilz
2020-08-04gn: python3-genenetwork2: Inherit from genenetwork2...* gn/packages/genenetwork.scm (python3-genenetwork2): Rewrite package definiton to inherit from genenetwork2 package. BonfaceKilz
2020-08-04Merge branch 'build/python3-migration'BonfaceKilz
2020-08-04gn: python3-genenetwork: Rename unittest2 inputBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove duplicate requests input...* gn/packages/genenetwork.scm (python3-genenetwork2): Delete duplicate input BonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove unnecessary commentsBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove python2-parallel...* gn/packages/genenetwork.scm (python3-genenetwork): Remove deprecated package BonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove python-qtlreaper...* gn/packages/genenetwork.scm (python3-genenetwork2): Remove deprecated python2-qtlreaper BonfaceKilz
2020-08-04gn: python3-genenetwork2: Add new package definition...* gn/packages/genenetwork.scm (python3-genenetwork2): Add it. Same as genenetwork2 for now. BonfaceKilz
2020-08-03gn: Move graphviz-2.26 to guix-pastEfraim Flashner
2020-08-02genenetwork1: Connect to the databaseEfraim Flashner
2020-08-02gn: Update crates for upstream name changesEfraim Flashner
2020-07-26A running genenetworkEfraim Flashner
2020-07-24genenetwork2: rename unittest2 inputBonfaceKilz
2020-07-24genenetwork2: add python2-mock and python-nose2 for easier testingBonfaceKilz
2020-07-24genenetwork2: add python2-coverageBonfaceKilz
2020-07-05gn: Use the guix-past channel....Adjust for python-2.4 being in the guix-past channel. Efraim Flashner
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