aboutsummaryrefslogtreecommitdiff
path: root/gn/packages/genenetwork.scm
AgeCommit message (Expand)Author
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings....Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings. Arun Isaac
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739...* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739 Frederick Muriuki Muriithi
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings. Arun Isaac
2022-10-18gn: genenetwork3: Depend on python-pymonad....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad. Arun Isaac
2022-10-18gn: genenetwork3: Depend on python-click....* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click. Arun Isaac
2022-10-05gn: (genenetwork2): Update to 3.11-2.1328932...* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.1328932 Frederick Muriuki Muriithi
2022-10-05gn: (genenetwork3): Update to 0.1.0-2.fe1b8be...* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.fe1b8be Frederick Muriuki Muriithi
2022-09-30gn: (genenetwork2): Update to 3.11-2.6f1a66b...* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.6f1a66b Frederick Muriuki Muriithi
2022-09-30gn: (genenetwork3): Update to 0.1.0-2.0d365dd...* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.0d365dd Frederick Muriuki Muriithi
2022-09-14gn: genenetwork2: Depend on python-xapian-bindings....* gn/packages/genenetwork.scm: Import (gnu packages search). (genenetwork2)[propagated-inputs]: Add python-xapian-bindings. Arun Isaac
2022-09-14gn: genenetwork2: Depend on python-pymonad....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-pymonad. Arun Isaac
2022-09-07gn: genenetwork2: Update to 3.11-2.be09d5a....* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.be09d5a. Frederick Muriuki Muriithi
2022-09-07gn: genenetwork3: Update to 0.1.0-2.1e1c9d8....* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.1e1c9d8. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork3: Update to 0.1.0-2.45b9bcb....* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.45b9bcb. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork2: Update to 3.11-2.1c384a1....* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.1c384a1. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork3: Update to 0.1.0-2.9ef2ddc....* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.9ef2ddc. Frederick Muriuki Muriithi
2022-08-17gn: genenetwork2: Update to 3.11-2.bc589b2....* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.bc589b2. Frederick Muriuki Muriithi
2022-08-15gn: genenetwork2: Update to 3.11-2.3cfd0ec....* gn/packages/crates-io.scm (genenetwork2) Update to 3.11-2.3cfd0ec. Frederick Muriuki Muriithi
2022-08-15gn: genenetwork3: Update to 0.1.0-2.6db3b2a....* gn/packages/crates-io.scm (genenetwork3) Update to 0.1.0-2.6db3b2a. Frederick Muriuki Muriithi
2022-08-02gn: genenetwork2: Update to 3.11-2.85ad783....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-07-29gn: genenetwork3: Update it...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-07-22gn: genenetwork2: Add gn-rust-correlation....* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add gn-rust-correlations. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Alexander_Kabui
2022-06-29gn: genenetwork3: Add gn-rust-correlation....* gn/packages/genenetwork.scm: Import module crates-io. (genenetwork3) [propagated-inputs]: Add gn-rust-correlations. BonfaceKilz
2022-06-21gn: genenetwork2: Update it...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. BonfaceKilz
2022-06-21gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Remove python-ipfshttpclient. BonfaceKilz
2022-06-14gn: genenetwork3: Use upstream python-pingouin....* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): Delete variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin-with-working-python-seaborn with upstream python-pingouin. Arun Isaac
2022-06-10gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Add python-lmdb. BonfaceKilz
2022-05-24New dependency: (genenetwork3: diffutils)...- Genenetwork3 depends on diffutils Frederick Muriuki Muriithi
2022-04-14Update genetwork3 to 39afc68...* gn/packages/genenetwork.scm: Update commit and hash. BonfaceKilz
2022-04-13Update GN3 to latest commit...GN2 on the testing branch relies on features in GN3 that are not present in commit 16367dab9248d3aa2660e0b5cafdce25e8f7067c of GN3. This commit thus updates the dependency to get the latest version of GN3 that is building successfully. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-04-12gn: python-rpy2-next: Remove package....python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander
2022-03-16gn: genenetwork3: Update to 0.1.0-2.16367da....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.16367da. BonfaceKilz
2022-03-16gn: genenetwork2: Move pytest and pytest-mock to propagated-inputs...These packages are required in the propagated-inputs so that they can be run locally. * gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and pytest to... [propagated-inputs]: here. BonfaceKilz
2022-03-16gn: genenetwork2: Add pytest and pytest-mock...* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and pytest-mock BonfaceKilz
2022-03-03gn: genenetwork3: Add python-pytest-mock...* gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Add python-pytest-mock. BonfaceKilz
2022-02-18gn: genenetwork2: Update to 3.11-2.17652b1....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.17652b1. [arguments]: Restore the default install phase. Arun Isaac
2022-02-18gn: genenetwork3: List propagated inputs in plain list....Guix now prefers inputs as a plain list instead of an association list. Modernize. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use plain list instead of association list. Arun Isaac
2022-02-18gn: genenetwork3: Remove implicit inputs....coreutils and diffutils are implicit inputs of the python-build-system. They don't have to be included explicitly. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove coreutils and diffutils. Arun Isaac
2022-02-18gn: genenetwork3: Update to 0.1.0-2.83a7aa7....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.83a7aa7. [arguments]: Enable tests. Arun Isaac
2022-02-18gn: genenetwork3: Move test inputs to native inputs....Test inputs are not required to actually run the built program. They should therefore be in native-inputs. They should not be propagated. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move python-mypy, python-mypy-extensions, python-pylint, python-hypothesis and python-pytest to ... [native-inputs]: ... here. Arun Isaac
2022-02-14Add pytest and hypothesis for automated testing...In the effort to improve automated testing, this commit adds two python modules that are useful for the tests. Frederick Muriuki Muriithi
2022-02-09gn: genenetwork2: Add python-ijson....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-ijson. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander Kabui
2022-02-09gn: genenetwork3: Add r-ctl....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-ctl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander Kabui
2022-01-26gn: genenetwork: Disable tests on python-seaborn....* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): New variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin with python-pingouin-with-working-python-seaborn. Arun Isaac
2022-01-06gn: genenetwork: Add diffutils...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add diffutils. BonfaceKilz
2022-01-05Revert "gn: genenetwork: Add pudb"...This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra dependency by running something like: ``` guix shell -L /home/bonface/projects/guix-bioinformatics \ -L /home/bonface/projects/guix-past/modules -C \ -D pudb -f guix.scm ``` BonfaceKilz
2022-01-05gn: genenetwork: Add pudb...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add pudb for trouble-shooting purposes. BonfaceKilz
2022-01-01genenetwork3: updated and disabled testsPjotr Prins
2022-01-01genenetwork2: put a hack in to fix failing build. Please amendPjotr Prins
2021-12-29Fix typo in import of (gnu packages textutils)....* gn/packages/genenetwork.scm: Import (gnu packages textutils), not (gn packages textutils). Arun Isaac
generated by cgit v1.2.3 (git 2.46.2) at 2025-02-09 05:13:21 +0000