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path: root/gn/packages/genenetwork.scm
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2023-09-05gn: genenetwork: Update mypy and yoyo•••* gn/packages/genenetwork.scm: Import (guix packages). (genenetwork3): Use yoyo-migrations v8.2.0 and python-mypy v0.981. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-05Adjust how native/propagated inputs are defined for GN3•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-04Revert "Pin python to python@3.8.5"•••This reverts commit aaa6e53e7b623105d05e67e95186aba5b4671010. Munyoki Kilyungi
2023-09-04Pin python to python@3.8.5•••* gn/packages/genenetwork.scm: (genenetwork3, genenetwork2): Using python@3.8.5 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-31Move gn-auth to (gn packages genenetwork).Arun Isaac
2023-07-05gn: genenetwork3: Update to 0.1.0-3.f52247c.•••* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-3.f52247c. Arun Isaac
2023-07-05Run genenetwork3 tests using pytest.•••* gn/packages/genenetwork.scm (genenetwork3)[arguments]: Replace check phase to use pytest. Arun Isaac
2023-06-18Remove unused twint from GN2pjotrp
2023-04-19gn: Update GN2 to 3.11-2.bfe557dcFrederick Muriuki Muriithi
2023-04-19gn: Update GN3 to 0.1.0-2.85610fc9Frederick Muriuki Muriithi
2023-03-08gn: genenetwork3: Add python-argon-cffi•••As part of improving the security of passwords, this commit adds python-argon-cffi that enables use of the better Argon2 password hashing algorithm, rather than the dated bcrypt that is a tad vulnerable to offline cracking. Frederick Muriuki Muriithi
2023-03-02genenetwork3: New dependency (python-email-validator)•••* gn/packages/genenetwork.scm: (python-email-validator): New dependency Frederick Muriuki Muriithi
2022-12-28gn: (genenetwork2): Add python-authlib as a dependency•••* gn/packages/genenetwork.scm: (python-authlib): New dependency Frederick Muriuki Muriithi
2022-12-28gn: (genenetwork2): Add flask-session as a dependency•••Flask session already handles a lot of the house-keeping involved with server-side sessions: this commit adds it as a dependency to avoid having to do the house-keeping manually. * gn/packages/genenetwork.scm: (python-flask-session): New dependency Frederick Muriuki Muriithi
2022-12-23Disable pingouin testsPjotr Prins
2022-12-23Making the build work for genenetworkPjotr Prins
2022-12-20gn: (genenetwork3): Add dependency•••* gn/packages/genenetwork.scm (genenetwork3): Add python-authlib as a dependency to genenetwork3 Frederick Muriuki Muriithi
2022-12-06gn: (genenetwork3): Update to 0.1.0-2.e781996•••* gn/packages/genenetwork.scm (genenetwork3): Update to version 0.1.0-2.e781996 Frederick Muriuki Muriithi
2022-11-10gn: Add missing imports and package licenses.Efraim Flashner
2022-11-03gn: (gn/packages/genenetwork.scm): Add yoyo-migrations as dependency•••* gn/packages/genenetwork.scm: add yoyo-migrations as a dependency. Frederick Muriuki Muriithi
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings.•••Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings. Arun Isaac
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739•••* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739 Frederick Muriuki Muriithi
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings.•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings. Arun Isaac
2022-10-18gn: genenetwork3: Depend on python-pymonad.•••* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad. Arun Isaac
2022-10-18gn: genenetwork3: Depend on python-click.•••* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click. Arun Isaac
2022-10-05gn: (genenetwork2): Update to 3.11-2.1328932•••* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.1328932 Frederick Muriuki Muriithi
2022-10-05gn: (genenetwork3): Update to 0.1.0-2.fe1b8be•••* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.fe1b8be Frederick Muriuki Muriithi
2022-09-30gn: (genenetwork2): Update to 3.11-2.6f1a66b•••* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.6f1a66b Frederick Muriuki Muriithi
2022-09-30gn: (genenetwork3): Update to 0.1.0-2.0d365dd•••* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.0d365dd Frederick Muriuki Muriithi
2022-09-14gn: genenetwork2: Depend on python-xapian-bindings.•••* gn/packages/genenetwork.scm: Import (gnu packages search). (genenetwork2)[propagated-inputs]: Add python-xapian-bindings. Arun Isaac
2022-09-14gn: genenetwork2: Depend on python-pymonad.•••* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-pymonad. Arun Isaac
2022-09-07gn: genenetwork2: Update to 3.11-2.be09d5a.•••* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.be09d5a. Frederick Muriuki Muriithi
2022-09-07gn: genenetwork3: Update to 0.1.0-2.1e1c9d8.•••* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.1e1c9d8. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork3: Update to 0.1.0-2.45b9bcb.•••* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.45b9bcb. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork2: Update to 3.11-2.1c384a1.•••* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.1c384a1. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork3: Update to 0.1.0-2.9ef2ddc.•••* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.9ef2ddc. Frederick Muriuki Muriithi
2022-08-17gn: genenetwork2: Update to 3.11-2.bc589b2.•••* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.bc589b2. Frederick Muriuki Muriithi
2022-08-15gn: genenetwork2: Update to 3.11-2.3cfd0ec.•••* gn/packages/crates-io.scm (genenetwork2) Update to 3.11-2.3cfd0ec. Frederick Muriuki Muriithi
2022-08-15gn: genenetwork3: Update to 0.1.0-2.6db3b2a.•••* gn/packages/crates-io.scm (genenetwork3) Update to 0.1.0-2.6db3b2a. Frederick Muriuki Muriithi
2022-08-02gn: genenetwork2: Update to 3.11-2.85ad783.•••* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-07-29gn: genenetwork3: Update it•••* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-07-22gn: genenetwork2: Add gn-rust-correlation.•••* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add gn-rust-correlations. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Alexander_Kabui
2022-06-29gn: genenetwork3: Add gn-rust-correlation.•••* gn/packages/genenetwork.scm: Import module crates-io. (genenetwork3) [propagated-inputs]: Add gn-rust-correlations. BonfaceKilz
2022-06-21gn: genenetwork2: Update it•••* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. BonfaceKilz
2022-06-21gn: Update genenetwork3•••* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Remove python-ipfshttpclient. BonfaceKilz
2022-06-14gn: genenetwork3: Use upstream python-pingouin.•••* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): Delete variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin-with-working-python-seaborn with upstream python-pingouin. Arun Isaac
2022-06-10gn: Update genenetwork3•••* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Add python-lmdb. BonfaceKilz
2022-05-24New dependency: (genenetwork3: diffutils)•••- Genenetwork3 depends on diffutils Frederick Muriuki Muriithi
2022-04-14Update genetwork3 to 39afc68•••* gn/packages/genenetwork.scm: Update commit and hash. BonfaceKilz
2022-04-13Update GN3 to latest commit•••GN2 on the testing branch relies on features in GN3 that are not present in commit 16367dab9248d3aa2660e0b5cafdce25e8f7067c of GN3. This commit thus updates the dependency to get the latest version of GN3 that is building successfully. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
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