| Age | Commit message (Expand) | Author |
|---|
| 2022-03-16 | gn: genenetwork3: Update to 0.1.0-2.16367da....* gn/packages/genenetwork.scm (genenetwork3): Update to
0.1.0-2.16367da.
| BonfaceKilz |
| 2022-03-16 | gn: genenetwork2: Move pytest and pytest-mock to propagated-inputs...These packages are required in the propagated-inputs so that they can be run
locally.
* gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and
pytest to...
[propagated-inputs]: here.
| BonfaceKilz |
| 2022-03-16 | gn: genenetwork2: Add pytest and pytest-mock...* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and
pytest-mock
| BonfaceKilz |
| 2022-03-03 | gn: genenetwork3: Add python-pytest-mock...* gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Add
python-pytest-mock.
| BonfaceKilz |
| 2022-02-18 | gn: genenetwork2: Update to 3.11-2.17652b1....* gn/packages/genenetwork.scm (genenetwork2): Update to
3.11-2.17652b1.
[arguments]: Restore the default install phase.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: List propagated inputs in plain list....Guix now prefers inputs as a plain list instead of an association
list. Modernize.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use
plain list instead of association list.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Remove implicit inputs....coreutils and diffutils are implicit inputs of the
python-build-system. They don't have to be included explicitly.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Remove coreutils and diffutils.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Update to 0.1.0-2.83a7aa7....* gn/packages/genenetwork.scm (genenetwork3): Update to
0.1.0-2.83a7aa7.
[arguments]: Enable tests.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Move test inputs to native inputs....Test inputs are not required to actually run the built program. They
should therefore be in native-inputs. They should not be propagated.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move
python-mypy, python-mypy-extensions, python-pylint, python-hypothesis
and python-pytest to ...
[native-inputs]: ... here.
| Arun Isaac |
| 2022-02-14 | Add pytest and hypothesis for automated testing...In the effort to improve automated testing, this commit adds two
python modules that are useful for the tests.
| Frederick Muriuki Muriithi |
| 2022-02-09 | gn: genenetwork2: Add python-ijson....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-ijson.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander Kabui |
| 2022-02-09 | gn: genenetwork3: Add r-ctl....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
r-ctl.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander Kabui |
| 2022-01-26 | gn: genenetwork: Disable tests on python-seaborn....* gn/packages/genenetwork.scm (python-seaborn-without-tests,
python-pingouin-with-working-python-seaborn): New variables.
(genenetwork3)[propagated-inputs]: Replace python-pingouin with
python-pingouin-with-working-python-seaborn.
| Arun Isaac |
| 2022-01-06 | gn: genenetwork: Add diffutils...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Add diffutils.
| BonfaceKilz |
| 2022-01-05 | Revert "gn: genenetwork: Add pudb"...This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra
dependency by running something like:
```
guix shell -L /home/bonface/projects/guix-bioinformatics \
-L /home/bonface/projects/guix-past/modules -C \
-D pudb -f guix.scm
```
| BonfaceKilz |
| 2022-01-05 | gn: genenetwork: Add pudb...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Add pudb for trouble-shooting purposes.
| BonfaceKilz |
| 2022-01-01 | genenetwork3: updated and disabled tests | Pjotr Prins |
| 2022-01-01 | genenetwork2: put a hack in to fix failing build. Please amend | Pjotr Prins |
| 2021-12-29 | Fix typo in import of (gnu packages textutils)....* gn/packages/genenetwork.scm: Import (gnu packages textutils),
not (gn packages textutils).
| Arun Isaac |
| 2021-12-21 | gn/packages/genenetwork.scm: Use csvdiff from textutils....* gn/packages/genenetwork.scm (genenetwork2): Use updated version of csvdiff
from textutils.
| BonfaceKilz |
| 2021-12-09 | gn: genenetwork: Define version using git-version....Also, semantic versioning starts from 0.1.0, not 0.0.1.
* gn/packages/genenetwork.scm (genenetwork3)[version]: Use
git-version.
| Arun Isaac |
| 2021-12-09 | gn: genenetwork: Reorganize inputs....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Remove python-sqlalchemy-stubs. Add python-sparqlwrapper and
rust-qtlreaper. Sort all inputs.
| Arun Isaac |
| 2021-11-17 | gn: genenetwork: Add javascript-xterm , javascript-xterm-style, javascript-xt...... * gn/packages/genenetwork.scm(genenetwork2) [propagated-inputs]: Add javascript-xterm , javascript-xterm-style and javascript-xterm-addon-fit
| Alexander Kabui |
| 2021-11-05 | gn: genenetwork: Remove unused package inputs | BonfaceKilz |
| 2021-11-05 | gn: genenetwork: Delete dead comments | BonfaceKilz |
| 2021-11-04 | gn: Update genenetwork3 to 0.0.1-guix-9e0fa5f | BonfaceKilz |
| 2021-11-01 | gn: Add python-pingouin...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
python-pingouin
| BonfaceKilz |
| 2021-10-27 | gn: genenetwork: Add python-deprecated...Only used when deemed necessary.
| BonfaceKilz |
| 2021-10-06 | gn: Update genenetwork3 to 0.0.1-guix-77c274b | BonfaceKilz |
| 2021-09-29 | gn: Add r-wgcna, r-rjson to genenetwork3....* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
| Alexander Kabui |
| 2021-08-28 | Moved packages into past/genenetwork1 and packages/pangenome to reduce chance of...breaking the main genenetwork packages.
| pjotrp |
| 2021-08-28 | Remove golang module loader | pjotrp |
| 2021-08-24 | genenetwork[23]: updated git checkout and commented out DAG generation | Pjotr Prins |
| 2021-08-20 | gn: Add missing import | Efraim Flashner |
| 2021-08-18 | Remove csv-diff from channel....This is already packaged upstream.
* gn/packages/genenetwork.scm: Remove "(gn packages golang)" import.
* gn/packages/golang.scm: Delete file.
| BonfaceKilz |
| 2021-08-16 | gn: Add toolbar overlay for debugging genenetwork2...* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-flask-debugtoolbar
| BonfaceKilz |
| 2021-08-16 | gn: start moving calculated files to build separately | Efraim Flashner |
| 2021-08-15 | gn: genenetwork2: Don't hardcode python version. | Efraim Flashner |
| 2021-08-12 | gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"...This fixes this error:
guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
| BonfaceKilz |
| 2021-08-11 | gn: fix genenetwork2 package definition | Efraim Flashner |
| 2021-08-11 | fixup genenetwork2 | Efraim Flashner |
| 2021-08-09 | gn: Adjust genenetwork2 for removal of python2-genenetwork2 | Efraim Flashner |
| 2021-08-07 | python2-genenetwork2: remove unused Python2 version of genenetwork | pjotrp |
| 2021-08-05 | gn: Update genenetwork3 to 0.0.1-guix-487e50e | BonfaceKilz |
| 2021-08-03 | gn: genenetwork3: Add csvdiff as a propagated input | BonfaceKilz |
| 2021-08-02 | gn: code updates | Efraim Flashner |
| 2021-07-12 | gn: Update genenetwork3 to 0.0.1-guix-7d22039 | BonfaceKilz |
| 2021-07-11 | gn: Add python24-direct....* gn/packages/python24.scm (python24-direct): New variable.
* gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add
python24-direct.
| Efraim Flashner |
| 2021-07-11 | Added GNU parallel to genenetwork2 | pjotrp |
| 2021-06-07 | gn: Update genenetwork3 to 0.0.1-guix-3881b50 | BonfaceKilz |
