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path: root/gn/packages/genenetwork.scm
AgeCommit message (Expand)Author
2023-10-06genenetwork3: Add python-pyld to propagated-inputs....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-ld. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-27gn-auth: Fix missing importFrederick Muriuki Muriithi
2023-09-27gn-auth: List packages to install...List all packages to install to hopefully fix failure in `sanity-check` phase. Frederick Muriuki Muriithi
2023-09-27gn-auth: Use newer setup.py...Use updated setup.py to try and fix issues with the `sanity-check` phase. Frederick Muriuki Muriithi
2023-09-27gn-auth: Use upstream python-mypyFrederick Muriuki Muriithi
2023-09-27gn-auth: Update commit and hash...* Update the commit hash and the hash of the files after updating the guix-bioinformatics channel configurations for the gn-auth channel. Frederick Muriuki Muriithi
2023-09-27gn-auth: Update commit and hash.Frederick Muriuki Muriithi
2023-09-25Delete python-mypy-0.981....* gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-20gn: genenetwork2: Add htmx....* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add htmx. Munyoki Kilyungi
2023-09-06gn: gn-auth: Update yoyo and mypy...Update yoyo and mypy to allow the use of Python-3.10 Frederick Muriuki Muriithi
2023-09-05gn: genenetwork: Update mypy and yoyo...* gn/packages/genenetwork.scm: Import (guix packages). (genenetwork3): Use yoyo-migrations v8.2.0 and python-mypy v0.981. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-05Adjust how native/propagated inputs are defined for GN3...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-09-04Revert "Pin python to python@3.8.5"...This reverts commit aaa6e53e7b623105d05e67e95186aba5b4671010. Munyoki Kilyungi
2023-09-04Pin python to python@3.8.5...* gn/packages/genenetwork.scm: (genenetwork3, genenetwork2): Using python@3.8.5 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-31Move gn-auth to (gn packages genenetwork).Arun Isaac
2023-07-05gn: genenetwork3: Update to 0.1.0-3.f52247c....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-3.f52247c. Arun Isaac
2023-07-05Run genenetwork3 tests using pytest....* gn/packages/genenetwork.scm (genenetwork3)[arguments]: Replace check phase to use pytest. Arun Isaac
2023-06-18Remove unused twint from GN2pjotrp
2023-04-19gn: Update GN2 to 3.11-2.bfe557dcFrederick Muriuki Muriithi
2023-04-19gn: Update GN3 to 0.1.0-2.85610fc9Frederick Muriuki Muriithi
2023-03-08gn: genenetwork3: Add python-argon-cffi...As part of improving the security of passwords, this commit adds python-argon-cffi that enables use of the better Argon2 password hashing algorithm, rather than the dated bcrypt that is a tad vulnerable to offline cracking. Frederick Muriuki Muriithi
2023-03-02genenetwork3: New dependency (python-email-validator)...* gn/packages/genenetwork.scm: (python-email-validator): New dependency Frederick Muriuki Muriithi
2022-12-28gn: (genenetwork2): Add python-authlib as a dependency...* gn/packages/genenetwork.scm: (python-authlib): New dependency Frederick Muriuki Muriithi
2022-12-28gn: (genenetwork2): Add flask-session as a dependency...Flask session already handles a lot of the house-keeping involved with server-side sessions: this commit adds it as a dependency to avoid having to do the house-keeping manually. * gn/packages/genenetwork.scm: (python-flask-session): New dependency Frederick Muriuki Muriithi
2022-12-23Disable pingouin testsPjotr Prins
2022-12-23Making the build work for genenetworkPjotr Prins
2022-12-20gn: (genenetwork3): Add dependency...* gn/packages/genenetwork.scm (genenetwork3): Add python-authlib as a dependency to genenetwork3 Frederick Muriuki Muriithi
2022-12-06gn: (genenetwork3): Update to 0.1.0-2.e781996...* gn/packages/genenetwork.scm (genenetwork3): Update to version 0.1.0-2.e781996 Frederick Muriuki Muriithi
2022-11-10gn: Add missing imports and package licenses.Efraim Flashner
2022-11-03gn: (gn/packages/genenetwork.scm): Add yoyo-migrations as dependency...* gn/packages/genenetwork.scm: add yoyo-migrations as a dependency. Frederick Muriuki Muriithi
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings....Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings. Arun Isaac
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739...* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739 Frederick Muriuki Muriithi
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings. Arun Isaac
2022-10-18gn: genenetwork3: Depend on python-pymonad....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad. Arun Isaac
2022-10-18gn: genenetwork3: Depend on python-click....* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click. Arun Isaac
2022-10-05gn: (genenetwork2): Update to 3.11-2.1328932...* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.1328932 Frederick Muriuki Muriithi
2022-10-05gn: (genenetwork3): Update to 0.1.0-2.fe1b8be...* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.fe1b8be Frederick Muriuki Muriithi
2022-09-30gn: (genenetwork2): Update to 3.11-2.6f1a66b...* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.6f1a66b Frederick Muriuki Muriithi
2022-09-30gn: (genenetwork3): Update to 0.1.0-2.0d365dd...* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.0d365dd Frederick Muriuki Muriithi
2022-09-14gn: genenetwork2: Depend on python-xapian-bindings....* gn/packages/genenetwork.scm: Import (gnu packages search). (genenetwork2)[propagated-inputs]: Add python-xapian-bindings. Arun Isaac
2022-09-14gn: genenetwork2: Depend on python-pymonad....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-pymonad. Arun Isaac
2022-09-07gn: genenetwork2: Update to 3.11-2.be09d5a....* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.be09d5a. Frederick Muriuki Muriithi
2022-09-07gn: genenetwork3: Update to 0.1.0-2.1e1c9d8....* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.1e1c9d8. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork3: Update to 0.1.0-2.45b9bcb....* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.45b9bcb. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork2: Update to 3.11-2.1c384a1....* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.1c384a1. Frederick Muriuki Muriithi
2022-08-30gn: genenetwork3: Update to 0.1.0-2.9ef2ddc....* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.9ef2ddc. Frederick Muriuki Muriithi
2022-08-17gn: genenetwork2: Update to 3.11-2.bc589b2....* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.bc589b2. Frederick Muriuki Muriithi
2022-08-15gn: genenetwork2: Update to 3.11-2.3cfd0ec....* gn/packages/crates-io.scm (genenetwork2) Update to 3.11-2.3cfd0ec. Frederick Muriuki Muriithi
2022-08-15gn: genenetwork3: Update to 0.1.0-2.6db3b2a....* gn/packages/crates-io.scm (genenetwork3) Update to 0.1.0-2.6db3b2a. Frederick Muriuki Muriithi
2022-08-02gn: genenetwork2: Update to 3.11-2.85ad783....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
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