guix-bioinformatics - Bioinformatics packages for GNU Guix

Age	Commit message (Collapse)	Author
2019-08-05	gn: pindel: Update package definition.	Efraim Flashner
	* gn/packages/bioinformatics.scm (pindel)[arguments]: Use 'invoke' when possible. Parameterize custom 'check phase.
2019-08-05	gn: pindel: Don't use unstable tarball.	Efraim Flashner
	* gn/packages/bioinformatics.scm (pindel)[source]: Download using 'git-fetch'.
2019-08-05	gn: Add edirect-11.	Efraim Flashner
	* gn/packages/bioinformatics.scm (edirect-11): New variable.
2018-10-14	ldc: use ldc from mainline	pjotrp

2017-12-18	Fixes against guix latest	Pjotr Prins

2017-10-23	Renamed plink-ng package since it went into mainline	pjotrp

2017-07-16	Guix moved zip to compression	pjotrp

2017-05-14	Updating guix	Pjotr Prins

2017-03-16	Moving gemma into its own module	pjotrp

2017-02-26	Added comments on guix viability	pjotrp
	- removed r-wcna and r-preprocesscore as they are in Guix now
2017-02-23	sambamba: moved into its own module	pjotrp

2017-02-23	sambamba: updated	pjotrp

2017-02-23	shunit2 package	pjotrp

2017-02-02	Patching Druntime for sambamba	pjotrp

2017-01-29	Shipped sambamba	pjotrp

2017-01-24	sambamba: remove lz4 and rdmd	pjotrp

2017-01-24	Sambamba uses lz4.so, so the source download is no longer needed.	pjotrp
	Tested view of both BAM and CRAM works.
2017-01-24	sambamba: make file builds with symbols by default and O2	pjotrp

2017-01-21	Debug version of sambamba	pjotrp

2017-01-20	Sambamba: switched to guix makefile	pjotrp

2016-12-25	Recent sambamba	pjotrp

2016-09-29	Move qtlreaper to genenetwork.scm	pjotrp

2016-08-16	Updated and fixed plink-nggn-stable	pjotrp

2016-08-14	Getting GN2 ready for new build - plink-ng is disabled and should not be ↵	Pjotr Prins
	built with atlas and lapack (FIXME)
2016-08-13	python-pil: replace with pillow	Pjotr Prins

2016-05-15	Merge branch 'gn-latest' of github.com:genenetwork/guix-bioinformatics into ↵	Pjotr Prins
	gn-latest
2016-05-15	Disable ant - it gives an error	Pjotr Prins

2016-05-11	r-biocprocesscore has been updated.	Dennis E. Mungai
	This should fix the genenetwork2 build issue, as noted on IRC.
2016-03-30	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-23	This runs with gn-stable	pjotrp

2016-03-23	Merge	pjotrp

2016-03-23	GN2 fix	pjotrp

2016-03-23	GN2 fixstable	Pjotr Prins

2016-03-23	Fixed hash	Pjotr Prins

2016-03-18	WIP: Add varscan.	Roel Janssen
	The JAR construction cannot contain a wild-card. That has to be fixed.
2016-03-16	Add delly.	Roel Janssen

2016-03-16	Add contra.	Roel Janssen

2016-03-11	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-11	Added test suite to pindel package.	Roel Janssen

2016-03-11	Small compile fixes for pindel	pjotrp

2016-03-10	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-10	Add multiple packages.	Roel Janssen
	- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib
2016-03-09	Small fixed	Pjotr Prins

2016-03-09	Added pindel without test suite.	Roel Janssen

2016-03-09	Added submodules to run tests, and provided an override to run the tests.	Roel Janssen

2016-03-05	Guix paths to the tools	pjotrp

2016-03-03	Fix for home-page, synopsis and description of vcflib.	Roel Janssen

2016-03-03	License fix for Freebayes.	Roel Janssen

2016-03-02	Add vcflib.	Roel Janssen

2016-03-02	Add FREEC.	Roel Janssen