| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-06-16 | containerize rn6-assembly app | Efraim Flashner | |
| 2020-05-14 | -a | pjotrp | |
| Oops | |||
| 2020-05-14 | bh20-seq-resource: add inputs | pjotrp | |
| 2020-05-14 | python-arvados-python-client: runtime dependencies. | pjotrp | |
| 2020-05-13 | gn: Add clustalw. | pjotrp | |
| 2020-05-07 | gn: grocsvs upstreamed | Efraim Flashner | |
| 2020-04-26 | gn: Add python-scanpy-git: 1.4.6-1.590d423 | Efraim Flashner | |
| 2020-04-21 | rearrange and deduplicate some packages | Efraim Flashner | |
| 2020-04-19 | gn: Update bh20-seq-resource. | Efraim Flashner | |
| 2020-04-10 | gn: Add bh20-seq-resource. | Efraim Flashner | |
| 2020-04-10 | gn: Add diagnostic-slider | Efraim Flashner | |
| 2020-03-22 | gn: Upstream edirect-gn | Efraim Flashner | |
| 2020-03-12 | gn: edirect-gn: Fix edirect-gn | Efraim Flashner | |
| This commit does many things: Adjust for upstream update. Fix the error not allowing us to download new data. Use self-compiled binaries instead of downloading from upstream. Install more scripts. Wrap all the programs and scripts so they can work in a pureenvironment. | |||
| 2020-03-12 | gn: edirect-gn: Build go packages from source. | Efraim Flashner | |
| 2020-03-12 | gn: Add missing module import. | Efraim Flashner | |
| 2020-03-12 | gn: Add grocsvs and dependencies | Efraim Flashner | |
| 2020-03-11 | gn: singlecellrshiny: Update home-page. | Efraim Flashner | |
| 2020-03-05 | gn: singlecellrshiny is ready | Efraim Flashner | |
| 2020-03-04 | WIP: singlecellrshiny | Efraim Flashner | |
| 2020-03-03 | WIP: incomplete update to singlecellrshiny. | Efraim Flashner | |
| 2020-02-18 | gn: Update edirect-gn to match upstream update. | Efraim Flashner | |
| 2020-02-16 | gn: edirect-gn: Wrap more binaries | Efraim Flashner | |
| 2020-02-05 | gn: edirect binary seems to have been modified again | Efraim Flashner | |
| 2020-01-09 | gn: edirect-gn: Use an alternate xtract.Linux | Efraim Flashner | |
| 2019-12-22 | Revert "Removed python-science and crates-io to build with latest guix" | Efraim Flashner | |
| This reverts commit adbf2a07ea0274f718b60ef5ba3a7786360552d1. | |||
| 2019-12-22 | Removed python-science and crates-io to build with latest guix | pjotrp | |
| 2019-12-18 | wip: singlecellrshiny is not yet complete | Efraim Flashner | |
| 2019-12-10 | gn: Remove r-qtl2. | Efraim Flashner | |
| This package is now upstream. | |||
| 2019-12-04 | gn: Add r-qtl2. | Efraim Flashner | |
| 2019-12-03 | gn: Adjust import for upstream changes | Efraim Flashner | |
| 2019-12-02 | gn: edirect-gn: Install more files. | Efraim Flashner | |
| 2019-11-25 | gn: seqwish: Link against dynamic sdsl-lite library. | Efraim Flashner | |
| 2019-11-25 | gn: boost-static: Upstreamed. | Efraim Flashner | |
| * gn/packages/boost.scm (boost-static): Remove variable. | |||
| 2019-11-25 | gn: Remove sdsl-lite-gn. | Efraim Flashner | |
| We can use libdivsufsort from (gnu packages bioinformatics). * gn/packages/bioinformatics.scm (sdsl-lite-gn): Remove variable. (seqwish, graphaligner)[inputs]: Remove sdsl-lite-gn. Add sdsl-lite, libdivsufsort. [arguments]: Adjust for change in inputs. | |||
| 2019-11-24 | gn: Add graphaligner, mummer. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (graphaligner, mummer): New variables. | |||
| 2019-11-21 | gn: rn6-assembly-error-app: Use pngs from static location. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app): Search for pngs in gn-rshiny'S $HOME rather than in /gnu/store. | |||
| 2019-11-19 | gn: Add seqwish. | Efraim Flashner | |
| 2019-10-16 | gn: bxd-power-calculator-app: Provide alternate locations for csv file. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bxd-power-calculator-app)[inputs]: Download csv datasets file from archive.org. Also note its location in IPFS should it become necessary later. | |||
| 2019-10-16 | gn: bxd-power-calculator-app: Bind to port 3978. | Efraim Flashner | |
| 2019-10-16 | gn: rn6-assembly-error-app: Create launcher script. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app)[arguments]: Remove some library substitutions. Fix location of png directory. Create launcher script. [inputs]: Add r-minimal. Move r-ggplot2, r-shiny ... [propagated-inputs]: ... to here. Add r. | |||
| 2019-10-16 | gn: Add bxd-power-calculator-app. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bxd-power-calculator-app): New variable. | |||
| 2019-09-29 | gn: rn6-assembly-error-app: Update to 0.12. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app): Update to 0.12. [license]: Update license. | |||
| 2019-09-26 | gn: Add rn6-assembly-error-app. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app): New variable. | |||
| 2019-09-11 | gn: Add qctool. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (qctool): New variable. | |||
| 2019-09-11 | gnu: Add bamaddrg. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bamaddrg): New variable. | |||
| 2019-09-03 | gn: Add ngmlr, svim. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (ngmlr, svim): New variables. | |||
| 2019-09-02 | gn: Add sniffles. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (sniffles): New variable. | |||
| 2019-08-28 | gn: bioinformatics.scm: Clean up module imports. | Efraim Flashner | |
| 2019-08-28 | gn: Remove some upstreamed packages | Efraim Flashner | |
| 2019-08-21 | gn: edirect-gn: Fix typo | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (edirect-gn)[supported-systems]: Replace atom with list. | |||
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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