Age | Commit message (Expand) | Author |
---|---|---|
2019-08-21 | gn: edirect-gn: Install missing binary....* gn/packages/bioinformatics.scm (edirect-gn)[arguments]: Install missing 'efetch' binary. Sort installed files alphabetically. Substitute call to 'exec perl' for all potentially affected files. | Efraim Flashner |
2019-08-20 | gn: Add custom edirect package | Efraim Flashner |
2019-08-05 | gn: varscan: Fix build....* gn/packages/bioinformatics.scm (varscan)[arguments]: Disable tests. Update all custom phases. [home-page]: Use https. [description]: Add it. | Efraim Flashner |
2019-08-05 | gn: Remove some duplicate packages | Efraim Flashner |
2019-08-05 | gn: contra: Remove bundled source....* gn/packages/bioinformatics.scm (contra)[source]: Add snippet to remove bundled sources. | Efraim Flashner |
2019-08-05 | gn: contra: Update package definition....* gn/packages/bioinformatics.scm (contra)[arguments]: Update custom 'install phase. | Efraim Flashner |
2019-08-05 | gn: contra: Update source uri....* gn/packages/bioinformatics.scm (contra)[source]: Update to new folder structure. | Efraim Flashner |
2019-08-05 | gn: pindel: Update package definition....* gn/packages/bioinformatics.scm (pindel)[arguments]: Use 'invoke' when possible. Parameterize custom 'check phase. | Efraim Flashner |
2019-08-05 | gn: pindel: Don't use unstable tarball....* gn/packages/bioinformatics.scm (pindel)[source]: Download using 'git-fetch'. | Efraim Flashner |
2019-08-05 | gn: Add edirect-11....* gn/packages/bioinformatics.scm (edirect-11): New variable. | Efraim Flashner |
2018-10-14 | ldc: use ldc from mainline | pjotrp |
2017-12-18 | Fixes against guix latest | Pjotr Prins |
2017-10-23 | Renamed plink-ng package since it went into mainline | pjotrp |
2017-07-16 | Guix moved zip to compression | pjotrp |
2017-05-14 | Updating guix | Pjotr Prins |
2017-03-16 | Moving gemma into its own module | pjotrp |
2017-02-26 | Added comments on guix viability...- removed r-wcna and r-preprocesscore as they are in Guix now | pjotrp |
2017-02-23 | sambamba: moved into its own module | pjotrp |
2017-02-23 | sambamba: updated | pjotrp |
2017-02-23 | shunit2 package | pjotrp |
2017-02-02 | Patching Druntime for sambamba | pjotrp |
2017-01-29 | Shipped sambamba | pjotrp |
2017-01-24 | sambamba: remove lz4 and rdmd | pjotrp |
2017-01-24 | Sambamba uses lz4.so, so the source download is no longer needed....Tested view of both BAM and CRAM works. | pjotrp |
2017-01-24 | sambamba: make file builds with symbols by default and O2 | pjotrp |
2017-01-21 | Debug version of sambamba | pjotrp |
2017-01-20 | Sambamba: switched to guix makefile | pjotrp |
2016-12-25 | Recent sambamba | pjotrp |
2016-09-29 | Move qtlreaper to genenetwork.scm | pjotrp |
2016-08-16 | Updated and fixed plink-nggn-stable | pjotrp |
2016-08-14 | Getting GN2 ready for new build - plink-ng is disabled and should not be buil... | Pjotr Prins |
2016-08-13 | python-pil: replace with pillow | Pjotr Prins |
2016-05-15 | Merge branch 'gn-latest' of github.com:genenetwork/guix-bioinformatics into g... | Pjotr Prins |
2016-05-15 | Disable ant - it gives an error | Pjotr Prins |
2016-05-11 | r-biocprocesscore has been updated....This should fix the genenetwork2 build issue, as noted on IRC. | Dennis E. Mungai |
2016-03-30 | Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics | Roel Janssen |
2016-03-23 | This runs with gn-stable | pjotrp |
2016-03-23 | Merge | pjotrp |
2016-03-23 | GN2 fix | pjotrp |
2016-03-23 | GN2 fixstable | Pjotr Prins |
2016-03-23 | Fixed hash | Pjotr Prins |
2016-03-18 | WIP: Add varscan....The JAR construction cannot contain a wild-card. That has to be fixed. | Roel Janssen |
2016-03-16 | Add delly. | Roel Janssen |
2016-03-16 | Add contra. | Roel Janssen |
2016-03-11 | Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics | Roel Janssen |
2016-03-11 | Added test suite to pindel package. | Roel Janssen |
2016-03-11 | Small compile fixes for pindel | pjotrp |
2016-03-10 | Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics | Roel Janssen |
2016-03-10 | Add multiple packages....- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib | Roel Janssen |
2016-03-09 | Small fixed | Pjotr Prins |