| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-11-21 | gn: rn6-assembly-error-app: Use pngs from static location. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app): Search for pngs in gn-rshiny'S $HOME rather than in /gnu/store. | |||
| 2019-11-19 | gn: Add seqwish. | Efraim Flashner | |
| 2019-10-16 | gn: bxd-power-calculator-app: Provide alternate locations for csv file. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bxd-power-calculator-app)[inputs]: Download csv datasets file from archive.org. Also note its location in IPFS should it become necessary later. | |||
| 2019-10-16 | gn: bxd-power-calculator-app: Bind to port 3978. | Efraim Flashner | |
| 2019-10-16 | gn: rn6-assembly-error-app: Create launcher script. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app)[arguments]: Remove some library substitutions. Fix location of png directory. Create launcher script. [inputs]: Add r-minimal. Move r-ggplot2, r-shiny ... [propagated-inputs]: ... to here. Add r. | |||
| 2019-10-16 | gn: Add bxd-power-calculator-app. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bxd-power-calculator-app): New variable. | |||
| 2019-09-29 | gn: rn6-assembly-error-app: Update to 0.12. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app): Update to 0.12. [license]: Update license. | |||
| 2019-09-26 | gn: Add rn6-assembly-error-app. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (rn6-assembly-error-app): New variable. | |||
| 2019-09-11 | gn: Add qctool. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (qctool): New variable. | |||
| 2019-09-11 | gnu: Add bamaddrg. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (bamaddrg): New variable. | |||
| 2019-09-03 | gn: Add ngmlr, svim. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (ngmlr, svim): New variables. | |||
| 2019-09-02 | gn: Add sniffles. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (sniffles): New variable. | |||
| 2019-08-28 | gn: bioinformatics.scm: Clean up module imports. | Efraim Flashner | |
| 2019-08-28 | gn: Remove some upstreamed packages | Efraim Flashner | |
| 2019-08-21 | gn: edirect-gn: Fix typo | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (edirect-gn)[supported-systems]: Replace atom with list. | |||
| 2019-08-21 | gn: edirect-gn: Add native-search-path. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (edirect-gn)[native-search-paths]: New field. | |||
| 2019-08-21 | gn: edirect-gn: Install missing binary. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (edirect-gn)[arguments]: Install missing 'efetch' binary. Sort installed files alphabetically. Substitute call to 'exec perl' for all potentially affected files. | |||
| 2019-08-20 | gn: Add custom edirect package | Efraim Flashner | |
| 2019-08-05 | gn: varscan: Fix build. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (varscan)[arguments]: Disable tests. Update all custom phases. [home-page]: Use https. [description]: Add it. | |||
| 2019-08-05 | gn: Remove some duplicate packages | Efraim Flashner | |
| 2019-08-05 | gn: contra: Remove bundled source. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (contra)[source]: Add snippet to remove bundled sources. | |||
| 2019-08-05 | gn: contra: Update package definition. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (contra)[arguments]: Update custom 'install phase. | |||
| 2019-08-05 | gn: contra: Update source uri. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (contra)[source]: Update to new folder structure. | |||
| 2019-08-05 | gn: pindel: Update package definition. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (pindel)[arguments]: Use 'invoke' when possible. Parameterize custom 'check phase. | |||
| 2019-08-05 | gn: pindel: Don't use unstable tarball. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (pindel)[source]: Download using 'git-fetch'. | |||
| 2019-08-05 | gn: Add edirect-11. | Efraim Flashner | |
| * gn/packages/bioinformatics.scm (edirect-11): New variable. | |||
| 2018-10-14 | ldc: use ldc from mainline | pjotrp | |
| 2017-12-18 | Fixes against guix latest | Pjotr Prins | |
| 2017-10-23 | Renamed plink-ng package since it went into mainline | pjotrp | |
| 2017-07-16 | Guix moved zip to compression | pjotrp | |
| 2017-05-14 | Updating guix | Pjotr Prins | |
| 2017-03-16 | Moving gemma into its own module | pjotrp | |
| 2017-02-26 | Added comments on guix viability | pjotrp | |
| - removed r-wcna and r-preprocesscore as they are in Guix now | |||
| 2017-02-23 | sambamba: moved into its own module | pjotrp | |
| 2017-02-23 | sambamba: updated | pjotrp | |
| 2017-02-23 | shunit2 package | pjotrp | |
| 2017-02-02 | Patching Druntime for sambamba | pjotrp | |
| 2017-01-29 | Shipped sambamba | pjotrp | |
| 2017-01-24 | sambamba: remove lz4 and rdmd | pjotrp | |
| 2017-01-24 | Sambamba uses lz4.so, so the source download is no longer needed. | pjotrp | |
| Tested view of both BAM and CRAM works. | |||
| 2017-01-24 | sambamba: make file builds with symbols by default and O2 | pjotrp | |
| 2017-01-21 | Debug version of sambamba | pjotrp | |
| 2017-01-20 | Sambamba: switched to guix makefile | pjotrp | |
| 2016-12-25 | Recent sambamba | pjotrp | |
| 2016-09-29 | Move qtlreaper to genenetwork.scm | pjotrp | |
| 2016-08-16 | Updated and fixed plink-nggn-stable | pjotrp | |
| 2016-08-14 | Getting GN2 ready for new build - plink-ng is disabled and should not be ↵ | Pjotr Prins | |
| built with atlas and lapack (FIXME) | |||
| 2016-08-13 | python-pil: replace with pillow | Pjotr Prins | |
| 2016-05-15 | Merge branch 'gn-latest' of github.com:genenetwork/guix-bioinformatics into ↵ | Pjotr Prins | |
| gn-latest | |||
| 2016-05-15 | Disable ant - it gives an error | Pjotr Prins | |
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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