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path: root/gn/packages/bioinformatics.scm
AgeCommit message (Collapse)Author
2021-08-11gn: Add pirs.Efraim Flashner
2021-08-11gn: Add pbsim2.Efraim Flashner
2021-08-11gn: Add pangenie.Efraim Flashner
2021-08-02clarify that this is an old seqwishErik Garrison
2021-08-02gn: gfaffix: Don't hardcode rust-handlegraph package versionEfraim Flashner
2021-08-02gn: rust-handlegraph-0.7: Update to 0.7.0-alpha.9.Efraim Flashner
2021-08-02get bugfix in rs-handlegraphErik Garrison
2021-08-02gn: Add gfaffix.Efraim Flashner
2021-08-01gn: Adjust python-whatshap for upstream changesEfraim Flashner
2021-07-21gn: Add python-whatshapEfraim Flashner
2021-07-15gn: Provide rtg.cfg for rtg-tools.Efraim Flashner
2021-07-11gn: Add rtg-toolsEfraim Flashner
* gn/packages/java.scm (rtg-tools): New variable. * gn/packages/bioinformatics (hap.py)[native-inputs]: Remove field. [inputs]: Add rtg-tools. [arguments]: Replace rtg-tools implementation.
2021-07-08gn: Add hap.pyEfraim Flashner
2021-06-21gn: Update vgEfraim Flashner
2021-05-26gn: Add pbmm2Efraim Flashner
2021-05-20gn: add bam2fastxEfraim Flashner
2021-05-11gn: genome-browser: Fix freetype error.Efraim Flashner
2021-05-06gn: ucsc genome browser: enable tests.Efraim Flashner
2021-05-04gn: genome browser tests goodEfraim Flashner
2021-05-03update vgErik Garrison
2021-04-30gn: genome-browser: update package, serviceEfraim Flashner
2021-04-30gn: genome browser: nearly have the graph working.Efraim Flashner
2021-04-25gn: ucsc genome browser: functioning web service?Efraim Flashner
2021-04-22gn: Initial ucsc-genome-browser and service.Efraim Flashner
2021-03-04gn: Update vg to 1.30.0.Efraim Flashner
2020-11-23upstream cwltools and dependant packagesEfraim Flashner
2020-11-10gn: bh20-seq-resource: Add python-twint as inputBonfaceKilz
* gn/packages/bioinformatics.scm (bh20-seq-resource): [propagated-input]: Add python-twint.
2020-11-05gn: bh20-seq-resource: Add python-redisBonfaceKilz
* gn/packages/bioinformatics.scm [propagated-inputs]: Add python-redis since it's required for the twitter-feed. See: https://github.com/BonfaceKilz/feedanalyser/
2020-09-06vg: Update to 1.26.1.Efraim Flashner
2020-09-01update vgEfraim Flashner
2020-08-30gn: Remove duplicate rust-gfaEfraim Flashner
2020-08-30Add vgEfraim Flashner
2020-06-28gn: Prepare bh20-seq-resource for serviceEfraim Flashner
2020-06-25gn: Update bh20-seq-resource to 1.0-3.ae4cb3c.Efraim Flashner
2020-06-25gn: rust-gfa: Update to 0.2.2.Efraim Flashner
2020-06-16gn: Add rust-gfa.Efraim Flashner
2020-06-16containerize rn6-assembly appEfraim Flashner
2020-05-14-apjotrp
Oops
2020-05-14bh20-seq-resource: add inputspjotrp
2020-05-14python-arvados-python-client: runtime dependencies.pjotrp
2020-05-13gn: Add clustalw.pjotrp
2020-05-07gn: grocsvs upstreamedEfraim Flashner
2020-04-26gn: Add python-scanpy-git: 1.4.6-1.590d423Efraim Flashner
2020-04-21rearrange and deduplicate some packagesEfraim Flashner
2020-04-19gn: Update bh20-seq-resource.Efraim Flashner
2020-04-10gn: Add bh20-seq-resource.Efraim Flashner
2020-04-10gn: Add diagnostic-sliderEfraim Flashner
2020-03-22gn: Upstream edirect-gnEfraim Flashner
2020-03-12gn: edirect-gn: Fix edirect-gnEfraim Flashner
This commit does many things: Adjust for upstream update. Fix the error not allowing us to download new data. Use self-compiled binaries instead of downloading from upstream. Install more scripts. Wrap all the programs and scripts so they can work in a pureenvironment.
2020-03-12gn: edirect-gn: Build go packages from source.Efraim Flashner
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-04 21:17:52 +0000