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path: root/gn/packages/bioinformatics.scm
AgeCommit message (Expand)Author
2020-06-28gn: Prepare bh20-seq-resource for serviceEfraim Flashner
2020-06-25gn: Update bh20-seq-resource to 1.0-3.ae4cb3c.Efraim Flashner
2020-06-25gn: rust-gfa: Update to 0.2.2.Efraim Flashner
2020-06-16gn: Add rust-gfa.Efraim Flashner
2020-06-16containerize rn6-assembly appEfraim Flashner
2020-05-14-a...Oops pjotrp
2020-05-14bh20-seq-resource: add inputspjotrp
2020-05-14python-arvados-python-client: runtime dependencies.pjotrp
2020-05-13gn: Add clustalw.pjotrp
2020-05-07gn: grocsvs upstreamedEfraim Flashner
2020-04-26gn: Add python-scanpy-git: 1.4.6-1.590d423Efraim Flashner
2020-04-21rearrange and deduplicate some packagesEfraim Flashner
2020-04-19gn: Update bh20-seq-resource.Efraim Flashner
2020-04-10gn: Add bh20-seq-resource.Efraim Flashner
2020-04-10gn: Add diagnostic-sliderEfraim Flashner
2020-03-22gn: Upstream edirect-gnEfraim Flashner
2020-03-12gn: edirect-gn: Fix edirect-gn...This commit does many things: Adjust for upstream update. Fix the error not allowing us to download new data. Use self-compiled binaries instead of downloading from upstream. Install more scripts. Wrap all the programs and scripts so they can work in a pureenvironment. Efraim Flashner
2020-03-12gn: edirect-gn: Build go packages from source.Efraim Flashner
2020-03-12gn: Add missing module import.Efraim Flashner
2020-03-12gn: Add grocsvs and dependenciesEfraim Flashner
2020-03-11gn: singlecellrshiny: Update home-page.Efraim Flashner
2020-03-05gn: singlecellrshiny is readyEfraim Flashner
2020-03-04WIP: singlecellrshinyEfraim Flashner
2020-03-03WIP: incomplete update to singlecellrshiny.Efraim Flashner
2020-02-18gn: Update edirect-gn to match upstream update.Efraim Flashner
2020-02-16gn: edirect-gn: Wrap more binariesEfraim Flashner
2020-02-05gn: edirect binary seems to have been modified againEfraim Flashner
2020-01-09gn: edirect-gn: Use an alternate xtract.LinuxEfraim Flashner
2019-12-22Revert "Removed python-science and crates-io to build with latest guix"...This reverts commit adbf2a07ea0274f718b60ef5ba3a7786360552d1. Efraim Flashner
2019-12-22Removed python-science and crates-io to build with latest guixpjotrp
2019-12-18wip: singlecellrshiny is not yet completeEfraim Flashner
2019-12-10gn: Remove r-qtl2....This package is now upstream. Efraim Flashner
2019-12-04gn: Add r-qtl2.Efraim Flashner
2019-12-03gn: Adjust import for upstream changesEfraim Flashner
2019-12-02gn: edirect-gn: Install more files.Efraim Flashner
2019-11-25gn: seqwish: Link against dynamic sdsl-lite library.Efraim Flashner
2019-11-25gn: boost-static: Upstreamed....* gn/packages/boost.scm (boost-static): Remove variable. Efraim Flashner
2019-11-25gn: Remove sdsl-lite-gn....We can use libdivsufsort from (gnu packages bioinformatics). * gn/packages/bioinformatics.scm (sdsl-lite-gn): Remove variable. (seqwish, graphaligner)[inputs]: Remove sdsl-lite-gn. Add sdsl-lite, libdivsufsort. [arguments]: Adjust for change in inputs. Efraim Flashner
2019-11-24gn: Add graphaligner, mummer....* gn/packages/bioinformatics.scm (graphaligner, mummer): New variables. Efraim Flashner
2019-11-21gn: rn6-assembly-error-app: Use pngs from static location....* gn/packages/bioinformatics.scm (rn6-assembly-error-app): Search for pngs in gn-rshiny'S $HOME rather than in /gnu/store. Efraim Flashner
2019-11-19gn: Add seqwish.Efraim Flashner
2019-10-16gn: bxd-power-calculator-app: Provide alternate locations for csv file....* gn/packages/bioinformatics.scm (bxd-power-calculator-app)[inputs]: Download csv datasets file from archive.org. Also note its location in IPFS should it become necessary later. Efraim Flashner
2019-10-16gn: bxd-power-calculator-app: Bind to port 3978.Efraim Flashner
2019-10-16gn: rn6-assembly-error-app: Create launcher script....* gn/packages/bioinformatics.scm (rn6-assembly-error-app)[arguments]: Remove some library substitutions. Fix location of png directory. Create launcher script. [inputs]: Add r-minimal. Move r-ggplot2, r-shiny ... [propagated-inputs]: ... to here. Add r. Efraim Flashner
2019-10-16gn: Add bxd-power-calculator-app....* gn/packages/bioinformatics.scm (bxd-power-calculator-app): New variable. Efraim Flashner
2019-09-29gn: rn6-assembly-error-app: Update to 0.12....* gn/packages/bioinformatics.scm (rn6-assembly-error-app): Update to 0.12. [license]: Update license. Efraim Flashner
2019-09-26gn: Add rn6-assembly-error-app....* gn/packages/bioinformatics.scm (rn6-assembly-error-app): New variable. Efraim Flashner
2019-09-11gn: Add qctool....* gn/packages/bioinformatics.scm (qctool): New variable. Efraim Flashner
2019-09-11gnu: Add bamaddrg....* gn/packages/bioinformatics.scm (bamaddrg): New variable. Efraim Flashner
2019-09-03gn: Add ngmlr, svim....* gn/packages/bioinformatics.scm (ngmlr, svim): New variables. Efraim Flashner
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