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path: root/gn/packages/bioinformatics.scm
AgeCommit message (Collapse)Author
2017-03-16Moving gemma into its own modulepjotrp
2017-02-26Added comments on guix viabilitypjotrp
- removed r-wcna and r-preprocesscore as they are in Guix now
2017-02-23sambamba: moved into its own modulepjotrp
2017-02-23sambamba: updatedpjotrp
2017-02-23shunit2 packagepjotrp
2017-02-02Patching Druntime for sambambapjotrp
2017-01-29Shipped sambambapjotrp
2017-01-24sambamba: remove lz4 and rdmdpjotrp
2017-01-24Sambamba uses lz4.so, so the source download is no longer needed.pjotrp
Tested view of both BAM and CRAM works.
2017-01-24sambamba: make file builds with symbols by default and O2pjotrp
2017-01-21Debug version of sambambapjotrp
2017-01-20Sambamba: switched to guix makefilepjotrp
2016-12-25Recent sambambapjotrp
2016-09-29Move qtlreaper to genenetwork.scmpjotrp
2016-08-16Updated and fixed plink-nggn-stablepjotrp
2016-08-14Getting GN2 ready for new build - plink-ng is disabled and should not be ↵Pjotr Prins
built with atlas and lapack (FIXME)
2016-08-13python-pil: replace with pillowPjotr Prins
2016-05-15Merge branch 'gn-latest' of github.com:genenetwork/guix-bioinformatics into ↵Pjotr Prins
gn-latest
2016-05-15Disable ant - it gives an errorPjotr Prins
2016-05-11r-biocprocesscore has been updated.Dennis E. Mungai
This should fix the genenetwork2 build issue, as noted on IRC.
2016-03-30Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-23This runs with gn-stablepjotrp
2016-03-23Mergepjotrp
2016-03-23GN2 fixpjotrp
2016-03-23GN2 fixstablePjotr Prins
2016-03-23Fixed hashPjotr Prins
2016-03-18WIP: Add varscan.Roel Janssen
The JAR construction cannot contain a wild-card. That has to be fixed.
2016-03-16Add delly.Roel Janssen
2016-03-16Add contra.Roel Janssen
2016-03-11Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-11Added test suite to pindel package.Roel Janssen
2016-03-11Small compile fixes for pindelpjotrp
2016-03-10Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-10Add multiple packages.Roel Janssen
- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib
2016-03-09Small fixedPjotr Prins
2016-03-09Added pindel without test suite.Roel Janssen
2016-03-09Added submodules to run tests, and provided an override to run the tests.Roel Janssen
2016-03-05Guix paths to the toolspjotrp
2016-03-03Fix for home-page, synopsis and description of vcflib.Roel Janssen
2016-03-03License fix for Freebayes.Roel Janssen
2016-03-02Add vcflib.Roel Janssen
2016-03-02Add FREEC.Roel Janssen
2016-03-01Use the original Makefile to statically compile lz4.Roel Janssen
2016-03-01Changed Sambamba source.Roel Janssen
2016-03-01Add freebayes.Roel Janssen
2016-03-01Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-02-29Reverted htslib for Sambamba to the repository's version.Roel Janssen
2016-02-28r-wgcna depspjotrp
2016-02-28r-wgcna depspjotrp
2016-02-28r-wgcna depspjotrp
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