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2016-03-18Package now builds on GNU Guix...Caveats: Only the CPU back-end builds at the moment. Needed inputs for OpenCL backends: clFFT and clBLAS.Dennis E. Mungai
2016-03-18Use proper formatting for License lists...Also updates the Arrayfire fetch URL to the one hosted by Arrayfire as Github's generated tarballs do not package the required submodules.Dennis E. Mungai
2016-03-18WIP: Add varscan....The JAR construction cannot contain a wild-card. That has to be fixed. Roel Janssen
2016-03-18Bump version to v3.3.3...Also change licensing schema with #prefix (es). Solves namespace problems. Also added wget as an input (As it's needed as a fallback incase checksums for Boost are invalid).Dennis E. Mungai
2016-03-17Merge pull request #10 from roelj/master...Added contra and delly.Pjotr Prins
2016-03-16Add delly.Roel Janssen
2016-03-16Add contra.Roel Janssen
2016-03-15Added Java packages, working, WIP and ON HOLD.Roel Janssen
2016-03-12Add a few more deps (needed glut)...Intel's Beignet package still can't build on guix, complains about libclang.Dennis E. Mungai
2016-03-12Add Intel Beignet to guix...This is Intel's Beignet, Intel's OpenCL platform for their GPUs and CPUs.Dennis E. Mungai
2016-03-12WIP...Work in progress. Investigate,Dennis E. Mungai
2016-03-11Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-11Added test suite to pindel package.Roel Janssen
2016-03-11Merge conflictpjotrp
2016-03-11Small compile fixes for pindelpjotrp
2016-03-11rename cppcheck to checkpjotrp
2016-03-10Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-10Add multiple packages....- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib Roel Janssen
2016-03-09spacespjotrp
2016-03-09fixPjotr Prins
2016-03-09Small fixedPjotr Prins
2016-03-09Merge branch 'master' of github.com:roelj/guix-bioinformatics into roeljPjotr Prins
2016-03-09Added pindel without test suite.Roel Janssen
2016-03-09Added submodules to run tests, and provided an override to run the tests.Roel Janssen
2016-03-08pocl updated with all dependencies....Have fun.Dennis E. Mungai
2016-03-08Merge branch 'master' of github.com:Brainiarc7/guix-bioinformatics into dennisPjotr Prins
2016-03-08Change license handling ...Still fails to build. Obscure ruby error.Dennis E. Mungai
2016-03-08Package now builds on GNU Guix...All done.Dennis E. Mungai
2016-03-08Wrong hash, correct on build...Tertiary OpenCL headers package.Dennis E. Mungai
2016-03-08Notes: Requires OpenCL headers to build....Port Khronos OpenCL headers to guix before building this package.Dennis E. Mungai
2016-03-08Add Khronos OpenCL ICD...Ported to guix.Dennis E. Mungai
2016-03-08Add ocl-icd package to GNU Guix...Added the Opensource reference OpenCL ICD, a dependency for Arrayfire and other OpenCL runtimes on GNU GuixDennis E. Mungai
2016-03-07Added transitional package llvm-3.7.1...Needed by POCL, version bumped.Dennis E. Mungai
2016-03-07Add clang-runtime as a dependency.Dennis E. Mungai
2016-03-07python2-pil was missing from gn2pjotrp
2016-03-05Guix paths to the toolspjotrp
2016-03-04Updated hash values....Changed with new commits to Arrayfire.Dennis E. Mungai
2016-03-04Bumped up to v.3.3.1-hotfix. ...Fixes a bunch of build bugsDennis E. Mungai
2016-03-04Add afnumpy to guix...afnumpy is a GPGPU - accelerated drop-in to numpyDennis E. Mungai
2016-03-04python-mysqlclient: propagate the shared libpjotrp
2016-03-04Merge branch 'master' of github.com:genenetwork/guix-bioinformaticspjotrp
2016-03-04GN2 is now a self contained package (except for the database)pjotrp
2016-03-04Merge pull request #8 from roelj/master...Add FREEC.Pjotr Prins
2016-03-03Fix for home-page, synopsis and description of vcflib.Roel Janssen
2016-03-03License fix for Freebayes.Roel Janssen
2016-03-03Added genenetwork2-files-smallpjotrp
2016-03-03Switch to cmake build system.Dennis E. Mungai
2016-03-02Add and port the Portable OpenCL package to guix...This is the POCL port to guix. It provides an open source , vendor neutral OpenCL ICD (Installable Client Driver), suitable for testing as a reference OpenCL platform. Regards, Brainiarc7.Dennis E. Mungai
2016-03-02Add vcflib.Roel Janssen
2016-03-02Add FREEC.Roel Janssen