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2022-03-01packages: lisp: add cl-qcjgart
2022-02-27gn: Add willowmapEfraim Flashner
2022-02-18gn: genenetwork2: Update to 3.11-2.17652b1....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.17652b1. [arguments]: Restore the default install phase. Arun Isaac
2022-02-18gn: genenetwork3: List propagated inputs in plain list....Guix now prefers inputs as a plain list instead of an association list. Modernize. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use plain list instead of association list. Arun Isaac
2022-02-18gn: genenetwork3: Remove implicit inputs....coreutils and diffutils are implicit inputs of the python-build-system. They don't have to be included explicitly. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove coreutils and diffutils. Arun Isaac
2022-02-18gn: genenetwork3: Update to 0.1.0-2.83a7aa7....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.83a7aa7. [arguments]: Enable tests. Arun Isaac
2022-02-18gn: genenetwork3: Move test inputs to native inputs....Test inputs are not required to actually run the built program. They should therefore be in native-inputs. They should not be propagated. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move python-mypy, python-mypy-extensions, python-pylint, python-hypothesis and python-pytest to ... [native-inputs]: ... here. Arun Isaac
2022-02-14Add pytest and hypothesis for automated testing...In the effort to improve automated testing, this commit adds two python modules that are useful for the tests. Frederick Muriuki Muriithi
2022-02-14gn: Upstream 2 julia packagesEfraim Flashner
2022-02-09gn: genenetwork2: Add python-ijson....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-ijson. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander Kabui
2022-02-09gn: genenetwork3: Add r-ctl....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-ctl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander Kabui
2022-02-05gn: tissue: Add guile to inputs....* gn/packages/gemini.scm (tissue)[inputs]: Add guile-3.0. Arun Isaac
2022-02-05gn: Add tissue....* gn/packages/gemini.scm (tissue): New variable. Arun Isaac
2022-02-04remove upstreamed cl-css-litejgart
2022-02-04gn: packages: lisp: remove upstreamed cl-snakesjgart
2022-02-02gn: packages: lisp: add cl-css-litejgart
2022-01-31gn: julia package updatesEfraim Flashner
2022-01-27gn: julia: Prepare packages for upstreamingEfraim Flashner
2022-01-27julia package cleanupEfraim Flashner
2022-01-27gn: packages: emacs-xyz: add emacs-trident-mode.jgart
2022-01-26add notebook-toolsjgart
2022-01-26add jrepjgart
2022-01-26gn: packages: crates-io: add rust-clap-for-jrepjgart
2022-01-26gn: packages: quality-control: remove utf-8-lineseparator...* upstreamed to GNU Guix jgart
2022-01-26gn: genenetwork: Disable tests on python-seaborn....* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): New variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin with python-pingouin-with-working-python-seaborn. Arun Isaac
2022-01-26gn: packages: lisp: Add cl-scribble.jgart
2022-01-26gn: packages: lisp: Add cl-meta.jgart
2022-01-26gn: packages: lisp: Add cl-fare-memoization.jgart
2022-01-26gn: packages: lisp: Add cl-lorem-ipsum.jgart
2022-01-26gn: packages: lisp: Add sbcl-fwoar-lisputils.jgart
2022-01-26gn: packages: lisp: Add cl-2am.jgart
2022-01-26gn: packages: lisp: Add cl-defstar.jgart
2022-01-26gn: packages: Add cl-snakes.jgart
2022-01-26gn: packages: lisp: Add sbcl-rollbar.jgart
2022-01-26gn: packages: utf-8-lineseparator: Don't use tag name in version field.jgart
2022-01-25gn: Fix failing python-twint build....* gn/packages/twint.scm (python-aiohttp-3.7.2): Delete it. (python-aiohttp-socks-0.5.5): Delete it. (python-yarl-1.6.2): Delete it. (python-twint) [propagated-inputs]: Replace python-aiohttp-socks-0.5.5 with python-aiohttp-socks and python-yarl-1.6.2 with python-yarl. BonfaceKilz
2022-01-24gn: quality-control: add libcsvjgart
2022-01-24gn: utf-8-lineseparator: Update to cj7.jgart
2022-01-23gn: Add verkko.Efraim Flashner
2022-01-23gn: graphaligner: Fix building and update to 1.0.14Efraim Flashner
2022-01-22gn: gemma-wrapper: added coreutils and note on testingpjotrp
2022-01-22gn: gemma-wrapper: updated to 0.99.6pjotrp
2022-01-22gn: gemma-wrapper: updated to 0.99.6pjotrp
2022-01-13gn: quality-control: Add utf-8-lineseparator....* gn/packages/quality-control.scm: New file. jgart
2022-01-09gn: Remove upstreamed node packagesEfraim Flashner
2022-01-09gn: Unconditionally use current rust package.Efraim Flashner
2022-01-09gn: check for new releases of giteaEfraim Flashner
2022-01-06gn: genenetwork: Add diffutils...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add diffutils. BonfaceKilz
2022-01-05Revert "gn: genenetwork: Add pudb"...This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra dependency by running something like: ``` guix shell -L /home/bonface/projects/guix-bioinformatics \ -L /home/bonface/projects/guix-past/modules -C \ -D pudb -f guix.scm ``` BonfaceKilz
2022-01-05gn: genenetwork: Add pudb...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add pudb for trouble-shooting purposes. BonfaceKilz