| Age | Commit message (Expand) | Author |
|---|
| 2022-06-14 | Update guix dependency to 6f75565b4ec3b8a7247699c327a3b3196c787f76. | Arun Isaac |
| 2022-06-14 | Update guix dependency to 824f2afcf0ffa7d515b04e360fa49a6b0c4a7753. | Arun Isaac |
| 2022-06-14 | Depend on specific commit of Guix upstream....* .guix-channel: Depend on specific commit of Guix upstream.
* README.org: Update recommended channels.scm and explain dependence
on specific commit.
| Arun Isaac |
| 2022-06-10 | gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
(propagated-inputs): Add python-lmdb.
| BonfaceKilz |
| 2022-06-07 | gn: hap.py: Add previously missing inputs. | Efraim Flashner |
| 2022-06-07 | gn: Fix building python2-bx-python. | Efraim Flashner |
| 2022-06-07 | gn: pplacer-scripts: Update argument field. | Efraim Flashner |
| 2022-06-07 | gn: python2-biopython: Fix building package. | Efraim Flashner |
| 2022-06-07 | gn: Fix building python2-rpy2. | Efraim Flashner |
| 2022-06-07 | gn: Hide inputs which have been dropped by Guix. | Efraim Flashner |
| 2022-06-07 | gn: Add missing module imports | Efraim Flashner |
| 2022-06-07 | gn: cleanup yaj imports | Efraim Flashner |
| 2022-06-01 | gn: Add python2-biopython....python2-biopython has been removed from Guix upstream.
* gn/packages/bioinformatics.scm (python2-biopython): New variable.
| Arun Isaac |
| 2022-06-01 | gn: bioinformatics: Import (gnu packages ocaml)....* gn/packages/bioinformatics.scm: Import (gnu packages ocaml) required
by dependencies of pplacer.
| Arun Isaac |
| 2022-06-01 | gnu: Add pplacer....pplacer and pplacer-scripts have been removed from Guix upstream.
* gn/packages/bioinformatics.scm (pplacer, pplacer-scripts): New
variables.
| Arun Isaac |
| 2022-06-01 | gnu: Add python-pytest-runner-2....python-pytest-runner-2 has been removed from Guix upstream.
* gn/packages/bioinformatics.scm (python-pytest-runner-2): New
variable.
| Arun Isaac |
| 2022-06-01 | gn: Adjust vg for other architectures | Efraim Flashner |
| 2022-06-01 | ruby-cbor upstreamed | Efraim Flashner |
| 2022-05-24 | New dependency: (genenetwork3: diffutils)...- Genenetwork3 depends on diffutils
| Frederick Muriuki Muriithi |
| 2022-05-11 | genenetwork-qc: Update the release | Frederick Muriuki Muriithi |
| 2022-05-09 | Add definition for genenetwork-qc...Add a package definition for the GeneNetwork Quality Control
application.
| Frederick Muriuki Muriithi |
| 2022-05-05 | services: databases: Add virtuoso maximum dirty buffers configuration....*
gn/services/databases.scm (<virtuoso-configuration>)[maximum-dirty-buffers]:
New field.
(virtuoso-shepherd-service): Serialize maximum-dirty-buffers field.
| Arun Isaac |
| 2022-05-05 | services: databases: Add virtuoso number of buffers configuration....*
gn/services/databases.scm (<virtuoso-configuration>)[number-of-buffers]:
New field.
(virtuoso-shepherd-service): Serialize number-of-buffers field.
| Arun Isaac |
| 2022-05-03 | gn: cva6: Set #:make-flags instead of overriding the build phase....* gn/packages/riscv.scm (cva6)[arguments]: Set #:make-flags instead of
overriding the build phase.
| Arun Isaac |
| 2022-05-03 | gn: cva6: Switch to upstream source instead of fork....* gn/packages/riscv.scm (cva6)[source]: Use upstream openhwgroup
source instead of the cornell-brg fork.
[arguments]: Add fix-stdout phase. Pass RISV=0 to make in build phase.
| Arun Isaac |
| 2022-05-02 | gn: cva6: Install executable as ariane....* gn/packages/riscv.scm (cva6)[arguments]: In the custom install
phase, install executable as ariane instead of Variane_testharness.
| Arun Isaac |
| 2022-05-02 | gn: Add cva6....* gn/packages/riscv.scm: Import (gn packages fpga), (gnu packages
virtualization), (guix build utils), (guix build-system gnu), (guix
gexp) and (guix licenses).
(cva6): New variable.
| Arun Isaac |
| 2022-05-02 | gn: Add verilator-4.110....* gn/packages/fpga.scm: New file.
| Arun Isaac |
| 2022-04-20 | Remove upstreamed packages | Efraim Flashner |
| 2022-04-20 | gn: Add wfa2-lib-static. | Efraim Flashner |
| 2022-04-20 | gn: wfa2-lib: Install headers. | Efraim Flashner |
| 2022-04-20 | gn: skribilo-with-gemtext-reader: Update to 0.9.5-1.621eb19....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Rename to
skribilo-latest and switch to the latest commit on the master branch.
(tissue)[propagated-inputs]: Replace skribilo-with-gemtext-reader with
skribilo-latest.
| Arun Isaac |
| 2022-04-19 | gn: Add wfa2-lib. | Efraim Flashner |
| 2022-04-15 | gn: tissue: Set absolute path to guile, not git, in shebang....* gn/packages/gemini.scm (tissue)[arguments]: In the custom
patch-source-shebangs phase, set the absolute path to guile, not git,
in the shebang.
| Arun Isaac |
| 2022-04-15 | gn: tissue: Set absolute path to guile in shebang....* gn/packages/gemini.scm (tissue)[arguments]: Replace the
patch-source-shebangs phase with a custom one.
| Arun Isaac |
| 2022-04-14 | notebooks: add cl-nb | jgart |
| 2022-04-14 | notebooks: move nb-upload | jgart |
| 2022-04-14 | nb-upload: update to b285302 | jgart |
| 2022-04-14 | Update genetwork3 to 39afc68...* gn/packages/genenetwork.scm: Update commit and hash.
| BonfaceKilz |
| 2022-04-14 | gn: tissue: Update to 0.1.0-0.85811ab....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.85811ab.
| Arun Isaac |
| 2022-04-13 | Update GN3 to latest commit...GN2 on the testing branch relies on features in GN3 that are not
present in commit 16367dab9248d3aa2660e0b5cafdce25e8f7067c of
GN3. This commit thus updates the dependency to get the latest version
of GN3 that is building successfully.
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
| Frederick Muriuki Muriithi |
| 2022-04-12 | gn: python-rpy2-next: Remove package....python-rpy2@3.4.5 has been upstreamed.
* gn/packages/python.scm (python-rpy2-next): Delete variable.
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]:
Replace python-rpy2-next with python-rpy2.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander |
| 2022-04-12 | gn: r-ctl: Update to 1.0.0-7....* gn/packages/statistics.scm (r-ctl): Update to 1.0.0-7.
[source]: Use cran-uri.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander |
| 2022-04-10 | gn: vg: Update to 1.39.0. | Efraim Flashner |
| 2022-04-08 | gn: Add smithwaterman-static....* gn/packages/static.scm (smithwaterman-static): New variable.
| Arun Isaac |
| 2022-04-07 | qc: update to a0d8c80...change unlicense
| jgart |
| 2022-04-07 | nb-upload: update to 3e8fe60 | jgart |
| 2022-04-07 | binderlite: add nb-upload | jgart |
| 2022-04-06 | gn: tissue: Substitute git path in tissue/git.scm....* gn/packages/gemini.scm (tissue)[arguments]: In the custom configure
phase, substitute absolute path to git in tissue/git.scm, but not in
tissue/web.scm.
| Arun Isaac |
| 2022-04-06 | quality-control: add WIP sbcl-qc-uploads package | jgart |
