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2022-04-14notebooks: add cl-nbjgart
2022-04-14notebooks: move nb-uploadjgart
2022-04-14nb-upload: update to b285302jgart
2022-04-14Update genetwork3 to 39afc68...* gn/packages/genenetwork.scm: Update commit and hash. BonfaceKilz
2022-04-14gn: tissue: Update to 0.1.0-0.85811ab....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.85811ab. Arun Isaac
2022-04-13Update GN3 to latest commit...GN2 on the testing branch relies on features in GN3 that are not present in commit 16367dab9248d3aa2660e0b5cafdce25e8f7067c of GN3. This commit thus updates the dependency to get the latest version of GN3 that is building successfully. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com> Frederick Muriuki Muriithi
2022-04-12gn: python-rpy2-next: Remove package....python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander
2022-04-12gn: r-ctl: Update to 1.0.0-7....* gn/packages/statistics.scm (r-ctl): Update to 1.0.0-7. [source]: Use cran-uri. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander
2022-04-10gn: vg: Update to 1.39.0.Efraim Flashner
2022-04-08gn: Add smithwaterman-static....* gn/packages/static.scm (smithwaterman-static): New variable. Arun Isaac
2022-04-07qc: update to a0d8c80...change unlicense jgart
2022-04-07nb-upload: update to 3e8fe60jgart
2022-04-07binderlite: add nb-uploadjgart
2022-04-06gn: tissue: Substitute git path in tissue/git.scm....* gn/packages/gemini.scm (tissue)[arguments]: In the custom configure phase, substitute absolute path to git in tissue/git.scm, but not in tissue/web.scm. Arun Isaac
2022-04-06quality-control: add WIP sbcl-qc-uploads packagejgart
2022-04-06move sbcl-qc to quality-control modulejgart
2022-04-06gn: tissue: Update to 0.1.0-0.25104d4....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.25104d4. Arun Isaac
2022-04-06gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.8d4f4c8....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.8d4f4c8. Arun Isaac
2022-04-05remove python-dotenv-for-binderlite...upstreamed: https://issues.guix.gnu.org/54712 jgart
2022-04-04add python-dotenv-for-binderlitejgart
2022-04-04gn: packages: python: add python-supervisor...todo: fix tests: https://github.com/NixOS/nixpkgs/blob/nixos-21.11/pkgs/development/python-modules/supervisor/default.nix#L16 jgart
2022-04-04gn: binderlite: add python-jgart-giturlparsejgart
2022-04-04gn: gem5: Prepare for test suite.Efraim Flashner
2022-04-03gn: Some packages upstreamedEfraim Flashner
2022-04-01gn: wfmash-static: Set name to wfmash-static....* gn/packages/static.scm (wfmash-static)[name]: Set to wfmash-static. Arun Isaac
2022-04-01gn: Add wfmash-static....* gn/packages/static.scm: Import (gnu packages bioinformatics), (gnu packages compression), (gnu packages cpp), (gnu packages jemalloc), (gnu packages maths), (guix gexp) and (guix utils). (htslib-minimal, wfmash-static): New variables. Arun Isaac
2022-04-01gn: hello-static: Move to gn/packages/static.scm....* gn/packages/riscv.scm: Do not import (gnu packages base), (guix packages) and (guix build-system gnu). (hello-static): Move to gn/packages/static.scm. * gn/packages/static.scm: New file. Arun Isaac
2022-04-01gn: riscv-pk: Remove package....riscv-pk has been upstreamed. * gn/packages/virtualization.scm: Do not import (guix build-system gnu) and (gnu packages cross-base). (riscv-pk): Delete variable. Arun Isaac
2022-04-01gn: wfmash: Remove package....wfmash has been upstreamed. * gn/packages/riscv.scm (wfmash): Delete variable. Arun Isaac
2022-03-31don't break guix pullEfraim Flashner
2022-03-31gn: Update gfaffix to 0.1.3Efraim Flashner
2022-03-29gn: hello-static: Set name to hello-static....* gn/packages/riscv.scm (hello-static)[name]: Set to hello-static. Arun Isaac
2022-03-29gnu: riscv-pk: Do not strip symbols fromhost and tohost....* gn/packages/virtualization.scm (riscv-pk)[arguments]: Keep symbols fromhost and tohost while stripping. Arun Isaac
2022-03-29gnu: hello: Use static-package....* gn/packages/riscv.scm: Import (guix build-system gnu). (hello): Use static-package. Arun Isaac
2022-03-24gnu: tissue: Update to 0.1.0-0.b154339....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.b154339. [arguments]: Import target-guile-effective-version from (guix build guile-build-system). Wrap executable to set GUILE_LOAD_PATH and GUILE_LOAD_COMPILED_PATH. Arun Isaac
2022-03-24gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.183eb12....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.183eb12. Arun Isaac
2022-03-23lisp: remove upstreamed cl-ningle updates...MERGED https://issues.guix.gnu.org/54503 jgart
2022-03-23gn: gem5: install configs, wrap binaries.Efraim Flashner
2022-03-23gn: skribilo-with-gemtext-reader: Update to skribilo-0.9.5-0.fb51be9...Building tissue was failing because of this package. * gn/packages/gemini.scm : Use commit "fb51be990a4bb8fb76373b519edfcf11390dcca1". [package]: Use above commit. Update hash. BonfaceKilz
2022-03-23gn: Add hello-staticEfraim Flashner
2022-03-23gn: gem5: unbundle pybind11Efraim Flashner
2022-03-23gn: Add riscv-pk.Efraim Flashner
2022-03-21lisp: add sbcl-ningle...https://issues.guix.gnu.org/54503 jgart
2022-03-21gn: wfmash: update to 0.7.0-26.81b8292.Efraim Flashner
2022-03-20gn: Add gem5.Efraim Flashner
2022-03-20gn: upstream python-scikit-allelEfraim Flashner
2022-03-16gn: genenetwork3: Update to 0.1.0-2.16367da....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.16367da. BonfaceKilz
2022-03-16gn: Add python-pixy.Efraim Flashner
2022-03-16gn: genenetwork2: Move pytest and pytest-mock to propagated-inputs...These packages are required in the propagated-inputs so that they can be run locally. * gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and pytest to... [propagated-inputs]: here. BonfaceKilz
2022-03-16gn: genenetwork2: Add pytest and pytest-mock...* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and pytest-mock BonfaceKilz