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2016-03-18WIP: Add varscan.Roel Janssen
The JAR construction cannot contain a wild-card. That has to be fixed.
2016-03-16Add delly.Roel Janssen
2016-03-16Add contra.Roel Janssen
2016-03-15Added Java packages, working, WIP and ON HOLD.Roel Janssen
2016-03-11Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-11Added test suite to pindel package.Roel Janssen
2016-03-11Merge conflictpjotrp
2016-03-11Small compile fixes for pindelpjotrp
2016-03-11rename cppcheck to checkpjotrp
2016-03-10Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-10Add multiple packages.Roel Janssen
- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib
2016-03-09spacespjotrp
2016-03-09fixPjotr Prins
2016-03-09Small fixedPjotr Prins
2016-03-09Merge branch 'master' of github.com:roelj/guix-bioinformatics into roeljPjotr Prins
2016-03-09Added pindel without test suite.Roel Janssen
2016-03-09Added submodules to run tests, and provided an override to run the tests.Roel Janssen
2016-03-08Merge branch 'master' of github.com:Brainiarc7/guix-bioinformatics into dennisPjotr Prins
2016-03-08Change license handling Dennis E. Mungai
Still fails to build. Obscure ruby error.
2016-03-08Package now builds on GNU GuixDennis E. Mungai
All done.
2016-03-08Wrong hash, correct on buildDennis E. Mungai
Tertiary OpenCL headers package.
2016-03-08Notes: Requires OpenCL headers to build.Dennis E. Mungai
Port Khronos OpenCL headers to guix before building this package.
2016-03-08Add Khronos OpenCL ICDDennis E. Mungai
Ported to guix.
2016-03-08Add ocl-icd package to GNU GuixDennis E. Mungai
Added the Opensource reference OpenCL ICD, a dependency for Arrayfire and other OpenCL runtimes on GNU Guix
2016-03-07Added transitional package llvm-3.7.1Dennis E. Mungai
Needed by POCL, version bumped.
2016-03-07Add clang-runtime as a dependency.Dennis E. Mungai
2016-03-07python2-pil was missing from gn2pjotrp
2016-03-05Guix paths to the toolspjotrp
2016-03-04Updated hash values.Dennis E. Mungai
Changed with new commits to Arrayfire.
2016-03-04Bumped up to v.3.3.1-hotfix. Dennis E. Mungai
Fixes a bunch of build bugs
2016-03-04Add afnumpy to guixDennis E. Mungai
afnumpy is a GPGPU - accelerated drop-in to numpy
2016-03-04python-mysqlclient: propagate the shared libpjotrp
2016-03-04Merge branch 'master' of github.com:genenetwork/guix-bioinformaticspjotrp
2016-03-04GN2 is now a self contained package (except for the database)pjotrp
2016-03-04Merge pull request #8 from roelj/masterPjotr Prins
Add FREEC.
2016-03-03Fix for home-page, synopsis and description of vcflib.Roel Janssen
2016-03-03License fix for Freebayes.Roel Janssen
2016-03-03Added genenetwork2-files-smallpjotrp
2016-03-03Switch to cmake build system.Dennis E. Mungai
2016-03-02Add and port the Portable OpenCL package to guixDennis E. Mungai
This is the POCL port to guix. It provides an open source , vendor neutral OpenCL ICD (Installable Client Driver), suitable for testing as a reference OpenCL platform. Regards, Brainiarc7.
2016-03-02Add vcflib.Roel Janssen
2016-03-02Add FREEC.Roel Janssen
2016-03-01Merge pull request #7 from roelj/masterPjotr Prins
An untested freebayes package description
2016-03-01Use the original Makefile to statically compile lz4.Roel Janssen
2016-03-01Changed Sambamba source.Roel Janssen
2016-03-01Add freebayes.Roel Janssen
2016-03-01Merge branch 'master' of https://github.com/genenetwork/guix-bioinformaticsRoel Janssen
2016-03-01Added glfw guix packageDennis E. Mungai
This is an open source, multi-platform library for creating windows with OpenGL contexts and receiving inputs and events. A common pipeline for applications such as Arrayfire that require access to OpenGL-OpenCL interops on multiple platforms.
2016-03-01Merge pull request #3 from genenetwork/masterDennis E. Mungai
Pull in Pjotr's changes.
2016-03-01gn2 updatedpjotrp
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