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2021-04-30Remove book module which is obsoletePjotr Prins
2021-04-26gn: Upstream 2 ruby gemsEfraim Flashner
2021-04-26Merge branch 'discourse-ruby-packages'Efraim Flashner
2021-04-25gn: ucsc genome browser: functioning web service?Efraim Flashner
2021-04-23gn: python: Add python2-werkzeug.BonfaceKilz
* gn/packages/python.scm (python2-werkzeug): New variable. This was deprecated upstream.
2021-04-23gn: python: Add python2-flaskBonfaceKilz
* gn/packages/python.scm: New variable. This was deprecated upstream.
2021-04-22gn: Initial ucsc-genome-browser and service.Efraim Flashner
2021-04-20gn: genetwork: Propagate python-rpy2-nextBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Use python-rpy2-next.
2021-04-20gn: python: Add python-rpy2-nextBonfaceKilz
2021-04-19gn: discourse packaging on holddiscourse-ruby-packagesEfraim Flashner
2021-04-19gn: move bnw service to port 8881Efraim Flashner
2021-04-18gn: gitea: Update to 1.13.7.Efraim Flashner
2021-03-22gn: python-sqlalchemy-stubs: Add new packageBonfaceKilz
2021-03-22gn: python-ipfshttpclient: Update to v0.7.0BonfaceKilz
2021-03-17gn: bnw: Update to new upstream revision.Efraim Flashner
2021-03-16gn: bnw: updatesEfraim Flashner
wrap run_scripts for octave invocations with coreutils adjust service
2021-03-08gn: python-ipfshttpclient: Make VERSON_MAXIMUM check 0.7.1BonfaceKilz
2021-03-08gn: python: Add python-ipfshttpclientBonfaceKilz
2021-03-08gn: python: Add python-multiaddr v0.0.9BonfaceKilz
2021-03-08gn: python: Add python-varint v1.0.2BonfaceKilz
2021-03-07gn: bnw: Update to newer revision.Efraim Flashner
* Use bundled javascript libraries, there seems to be some mismatch between upstream and out copies. * Wrap shell scripts with coreutils.
2021-03-04gn: Update vg to 1.30.0.Efraim Flashner
2021-03-04gn: add missing javascript change with BNW updateEfraim Flashner
2021-03-04gn: Remove two upstreamed packages.Efraim Flashner
2021-03-04gn: Update bnw to latest version.Efraim Flashner
Update bnw and the service
2021-02-24gn: more WIP on discourseEfraim Flashner
2021-02-22gn: more discourse packagesEfraim Flashner
2021-02-21gn: more discourse packagesEfraim Flashner
2021-02-19gn: More discourse packagingEfraim Flashner
2021-02-19mod_python session path fixPjotr Prins
2021-02-17WIP ruby packagesEfraim Flashner
2021-02-15gn1: portPjotr Prins
2021-02-15gn1: defaultPjotr Prins
2021-02-15gn1: parametrizeGN1 user
2021-02-05gn1: parametrize source so I can use a local dirGN1 user
2021-02-05gn1: make run in a containerroot
2021-02-05Merge pull request 'Move packages to genetwork1 propagated inputs' (#11) ↵Pjotr Prins
from Chore/Add-required-pkgs-to-gn1-inputs into master Reviewed-on: http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics/pulls/11
2021-02-05Move packages to genetwork1 propagated inputsBonfaceKilz
* gn/services/genenetwork.scm: Move some package defs to ... * gn/packages/genenetwork.scm [propagated-inputs]: ... here.
2021-02-05packages: python24: Replace with ipfs file linkBonfaceKilz
* gn/packages/python24.scm: (GN1-thirdparty-sources): Use ipfs link
2021-02-03gn: javascript: Add javascript-font-awesomeAlexander Kabui
* gn/packages/javascript.scm: (javascript-font-awesome): New package. * gn/packages/javascript.scm: (genenetwork2) [propagated-inputs]: Add javascript-font-awesome. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-02-03octopus config changesEfraim Flashner
2021-01-31gn: javascript: Replace javascript-zxcvbn-async with javascript-zxcvbnAlexander Kabui
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-24gn: bio-vcf upstreamedEfraim Flashner
2021-01-17gn: update bio-rubyEfraim Flashner
2021-01-13gn: update ratspub to 0.4.5.Efraim Flashner
2021-01-12gn: javascript: Add xtermjs and associated css stylingAlexanderkabui
* gn/packages/javascript.scm: (javascript-xterm): New package. (javascript-xterm-style): New package. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-12gn: services: gn1-httpd-config: Use MemorySession for sessionsBonfaceKilz
See: <http://modpython.org/live/mod_python-3.3.1/doc-html/pyapi-sess-classes.html>
2021-01-12gn: genenetwork1: Create "useralt" and replace "user" with itBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork1): [arguments]: In 'changes-for-deployed-service, copy "web/webqtl/user" to "web/webqtl/useralt" and replace how "user" is imported in "web/webqtl/main.py"
2021-01-12gn: services: gn1-httpd-config: Replace SetHandler with AddHandlerBonfaceKilz
* gn/services/gn1-httpd-config.scm (GN1-httpd-config): Use "AddHandler mod_python .py". This allows all python modules and submodules to be loaded by modpython.
2021-01-12gn: services: gn1-httpd-config: Change document root to "/web/"BonfaceKilz
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