| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-09-11 | GeneNetwork2: Update commit and hash | Frederick Muriuki Muriithi | |
| This update pushes some logging of a font file. The purpose is to debug relative paths, and prove/disprove a hypothesis. | |||
| 2024-09-10 | Revert "gn: gemma-wrapper: updated to 0.99.7" | Frederick Muriuki Muriithi | |
| This reverts commit 7eaa7028ffe3e8b0d5dfe242da87dd76930f637e. This does not include all the dependencies needed to run GEMMA. These were included with commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070 later, but that also had to be reverted due to another issue altogether. | |||
| 2024-09-10 | Revert "(gn packages gemma-wrapper): Add new dependencies." | Frederick Muriuki Muriithi | |
| This reverts commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070. At this point, running GEMMA will fail because it attempts to extract files into the /tmp directory, which leads to permission issues when there is an attempt to change the permission bits of /tmp. | |||
| 2024-09-10 | (gn packages gemma-wrapper): Add new dependencies. | Frederick Muriuki Muriithi | |
| 2024-09-10 | genenetwork2: Update commit and hash | Frederick Muriuki Muriithi | |
| 2024-08-26 | gn: mouse-longevity: Remove breaking line until resolved. | jgart | |
| 2024-08-21 | gn: mouse-longevity: Update to 8a7fdd3. | jgart | |
| 2024-08-16 | gn: mouse-longevity: Update to d798fc1 | jgart | |
| 2024-08-15 | gn: mouse-longevity: Update upstream url. | jgart | |
| 2024-08-15 | Revert "rshiny: add logging for applications" | jgart | |
| This reverts commit 57444f7e0f360eb88e11aed4217143cafb164325. | |||
| 2024-08-15 | Revert "rshiny: refactor import code into define-module form" | jgart | |
| This reverts commit 4addf0abad6c05b060ea4947512c6b413e3b750b. | |||
| 2024-08-15 | gn: genenetwork2: Update genenetwork2 with new markdown client deps. | Alexander_Kabui | |
| * gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add javascript-ace, javascript-diff, javascript-diff2html, javascript-diff2html-ui javascript-highlight, javascript-highlight-ui, javascript-marked, javascript-marked-highlight. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-15 | gn: javascript: Add javascript-highlight-ui. | Alexander_Kabui | |
| * gn/packages/javascript.scm (javascript-highight-ui): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-15 | gn: javascript: Add javascript-highlight. | Alexander_Kabui | |
| * gn/packages/javascript.scm (javascript-highlight): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-15 | gn: javascript: Add javascript-diff. | Alexander_Kabui | |
| * gn/packages/javascript.scm (javascript-diff): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-15 | gn: javascript: Add javascript-diff2html-ui. | Alexander_Kabui | |
| * gn/packages/javascript.scm (javascript-diff2html-ui): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-15 | gn: javascript: Add javascript-diff2html. | Alexander_Kabui | |
| * gn/packages/javascript.scm (javascript-diff2html): New package. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-15 | gn: javascript: Update javascript-ace. | Alexander_Kabui | |
| * gn/packages/javascript.scm: (javascript-ace): Update License. Apply guix style. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-13 | gn-auth: Update commit and hash. | Frederick Muriuki Muriithi | |
| 2024-08-08 | gn-auth: update commit and hash. | Frederick Muriuki Muriithi | |
| 2024-08-07 | gn-auth: Update commit and hash | Frederick Muriuki Muriithi | |
| Update the hash to pull in fixes for the following ops issues: * Installing of Jinja2 text-file templates for emails * Logging out unhandled exceptions as errors for easier debugging | |||
| 2024-08-07 | Production release | Frederick Muriuki Muriithi | |
| * GN2: 0998033d0a7ea26ed96b00a360a334bae6de8c55 * GN3: efa965c34db3662762dde8ecf376cce561d85453 * GN-AUTH: eb05221f57ec4b6a5537ac7661811ba33b4b0385 | |||
| 2024-08-02 | rshiny: refactor import code into define-module form | jgart | |
| 2024-08-02 | rshiny: add logging for applications | jgart | |
| 2024-07-31 | genecup: disable debug mode in flask application for production | jgart | |
| 2024-07-31 | mouse-longevity-app: extract the pubmed archive in the package | jgart | |
| 2024-07-31 | gn: Add mouse-longevity-app. | jgart | |
| * gn/packages/mouse-longevity.scm (mouse-longevity-app): New variable. | |||
| 2024-07-31 | genecup: update url | jgart | |
| 2024-07-25 | gn-uploader: (python-flask-session): New dependency. | Frederick Muriuki Muriithi | |
| 2024-07-25 | gn-uploader: (python-pymonad): New dependency. | Frederick Muriuki Muriithi | |
| 2024-07-25 | gn-uploader: (python-authlib): New dependency. | Frederick Muriuki Muriithi | |
| 2024-07-17 | gn-auth and GN2: Update commits and hashes. | Frederick Muriuki Muriithi | |
| 2024-07-15 | gn-auth: Add commit and revision to version. Update commit and hash. | Frederick Muriuki Muriithi | |
| 2024-07-09 | GN3: update commit and hash. | Frederick Muriuki Muriithi | |
| 2024-07-08 | gn-uploader: Add node-resumablejs as a dependency.update-gn3-for-production-container | Frederick Muriuki Muriithi | |
| 2024-07-08 | GN3: update commit and hash. | Frederick Muriuki Muriithi | |
| 2024-07-06 | gn: gemma-wrapper: updated to 0.99.7 | pjotrp | |
| 2024-06-28 | import (gn packages genecup) module. | Frederick Muriuki Muriithi | |
| 2024-06-28 | Remove import for missing module. | Frederick Muriuki Muriithi | |
| 2024-06-28 | genenetwork-full-system: Do synchronised release | Frederick Muriuki Muriithi | |
| Do a syncronised release of the genenetwork full system (it's not actually full, since gn-uploader is not yet part of the release, but it's good enough), with the following commits for the various parts: * GeneNetwork2: deb8d7241f1ca05865fababc2799ead9a684f8be * GeneNetwork3: 9f27bdc3ca41e09a090093bc36f48851fcc4fc42 * gn-auth: c8658a764cf30605c6e5a1361dcd09ddd422e371 | |||
| 2024-06-22 | rename ratspub.scm to genecup.scm | Shepherd on Tux02 | |
| 2024-06-21 | ratspub: remove definitions as they are replaced by genecup | Shepherd on Tux02 | |
| 2024-06-21 | Merge branch 'master' of /home/git/public/guix-bioinformatics | Shepherd on Tux02 | |
| 2024-06-21 | genecup: fix typo | pjotrp | |
| 2024-06-20 | Merge branch 'master' of /home/git/public/guix-bioinformatics | Shepherd on Tux02 | |
| 2024-06-20 | Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformatics | Shepherd on Tux02 | |
| 2024-06-20 | Rename penguin2->tux02 | Shepherd on Tux02 | |
| 2024-06-20 | genecup: use keras without tests | Pjotr Prins | |
| 2024-06-14 | gn-uploader: (javascript-jquery): New dependency | Frederick Muriuki Muriithi | |
| JQuery is needed to get the bootstrap plugins working correctly. | |||
| 2024-06-13 | gn-uploader: javascript-bootstrap: New dependency | Frederick Muriuki Muriithi | |
| Bundle javascript-bootstrap with gn-uploader for styling. | |||
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