guix-bioinformatics - Bioinformatics packages for GNU Guix

Age	Commit message (Collapse)	Author
2017-02-27	r-fgsea: added with dependency r-fastmatch	pjotrp

2017-02-27	phewas.scm: started on Phewas package	pjotrp

2017-02-27	r-emma: added	pjotrp

2017-02-26	Added comments on guix viability	pjotrp
	- removed r-wcna and r-preprocesscore as they are in Guix now
2017-02-26	Updating packages	pjotrp
	- Removed slurm as it is in mainline now
2017-02-26	Indentation	pjotrp

2017-02-26	rdmd: is in Guix master now	pjotrp

2017-02-25	sambamba: patch main bin	pjotrp

2017-02-24	sambamba: now links in samtools and bcftools	pjotrp

2017-02-24	Speedtest-cli: added	pjotrp

2017-02-23	sambamba: moved into its own module	pjotrp

2017-02-23	sambamba: updated	pjotrp

2017-02-23	shunit2: installs and runs	pjotrp

2017-02-23	shunit2 package	pjotrp

2017-02-23	ldc: renaming package because it is also on guix master	pjotrp

2017-02-19	Perl Time::ParseDate installs fine	pjotrp

2017-02-19	Adding Perl package	pjotrp

2017-02-02	Patching Druntime for sambamba	pjotrp

2017-01-29	Shipped sambamba	pjotrp

2017-01-28	Updated ldc	pjotrp

2017-01-24	sambamba: remove lz4 and rdmd	pjotrp

2017-01-24	Sambamba uses lz4.so, so the source download is no longer needed.	pjotrp
	Tested view of both BAM and CRAM works.
2017-01-24	sambamba: make file builds with symbols by default and O2	pjotrp

2017-01-21	Debug version of sambamba	pjotrp

2017-01-20	Sambamba: switched to guix makefile	pjotrp

2016-12-26	Updating ldc to beta6 and renaming source files	pjotrp

2016-12-25	Recent sambamba	pjotrp

2016-12-24	Fixd ldc package	pjotrp

2016-12-24	Fix ldc 0.17.2	pjotrp

2016-12-11	ldc: updated rdmd2gn-deploy	pjotrp

2016-12-11	pocl: remove pocl for the time being - it confuses things	pjotrp

2016-12-11	ldc: share main ldc definition	pjotrp

2016-12-11	ldc: remove 0.16	pjotrp

2016-12-11	pocl: use llvm from main	pjotrp

2016-12-11	llvm: use llvm from main	pjotrp

2016-12-11	ldc: Rename module	pjotrp

2016-12-11	Merge branch 'master' of github.com:genenetwork/guix-bioinformatics into ↵	pjotrp
	gn-deploy
2016-12-01	Add ldc to repository	Muriithi Frederick Muriuki
	* Copy ldc.scm from guix * Update ldc.scm with 2 new versions of ldc, version 0.17.2 and version 1.1.0-beta4 * Deactivate test temporarily to allow installation
2016-11-06	Merge pull request #18 from fredmanglis/master	Pjotr Prins
	Add the ruby-mechanize gem and dependencies
2016-11-06	Remove unnecessary package definitions	Muriithi Frederick Muriuki
	- rake and minitest are part of ruby, and do not need separate package definitions. To make the tests run, use ruby as an input to ruby-mechanize
2016-11-02	Add ruby-rake and ruby-minitest for tests	Muriithi Frederick Muriuki
	- Add ruby-rake package and ruby-minitest to enable the automated running of tests while building the mechanize package
2016-10-29	Deactivate test for mechanize and dependencies	Muriithi Frederick Muriuki
	- Failing tests are preventing successful build and installation of the ruby-mechanize gem. Temporarily deactivate tests to enable installation of ruby-mechanize
2016-10-28	Add the ruby-mechanize gem and dependencies	Muriithi Frederick Muriuki
	- Add the ruby-mechanize gem and the dependent packages to the list of available ruby packages
2016-09-30	R-ctl addedgn-staging	pjotrp

2016-09-30	Reverted to pil (pillow is not 100% compatible)	pjotrp

2016-09-30	qtlreaper: updated and added tests	pjotrp

2016-09-29	qtlreaper: updated to package that checks for out of bound errors	pjotrp

2016-09-29	Move qtlreaper to genenetwork.scm	pjotrp

2016-08-16	Updated and fixed plink-nggn-stable	pjotrp

2016-08-16	Erlang and Elixir moved into main line	pjotrp