guix-bioinformatics - Bioinformatics packages for GNU Guix

Age	Commit message (Collapse)	Author
2016-03-23	gn: Add 4store.	Roel Janssen
	* gn/packages/4store.scm (4store): New variable. * 4store-fix-buildsystem.patch: New file.
2016-03-20	Add mongodb.	Roel Janssen
	This package was rejected upstream because it contains the sources of libraries that are also available as shared libraries.
2016-03-18	WIP: Add varscan.	Roel Janssen
	The JAR construction cannot contain a wild-card. That has to be fixed.
2016-03-16	Add delly.	Roel Janssen

2016-03-16	Add contra.	Roel Janssen

2016-03-15	Added Java packages, working, WIP and ON HOLD.	Roel Janssen

2016-03-11	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-11	Added test suite to pindel package.	Roel Janssen

2016-03-11	Merge conflict	pjotrp

2016-03-11	Small compile fixes for pindel	pjotrp

2016-03-11	rename cppcheck to check	pjotrp

2016-03-10	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-10	Add multiple packages.	Roel Janssen
	- tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib
2016-03-09	spaces	pjotrp

2016-03-09	fix	Pjotr Prins

2016-03-09	Small fixed	Pjotr Prins

2016-03-09	Merge branch 'master' of github.com:roelj/guix-bioinformatics into roelj	Pjotr Prins

2016-03-09	Added pindel without test suite.	Roel Janssen

2016-03-09	Added submodules to run tests, and provided an override to run the tests.	Roel Janssen

2016-03-08	Merge branch 'master' of github.com:Brainiarc7/guix-bioinformatics into dennis	Pjotr Prins

2016-03-08	Change license handling	Dennis E. Mungai
	Still fails to build. Obscure ruby error.
2016-03-08	Package now builds on GNU Guix	Dennis E. Mungai
	All done.
2016-03-08	Wrong hash, correct on build	Dennis E. Mungai
	Tertiary OpenCL headers package.
2016-03-08	Notes: Requires OpenCL headers to build.	Dennis E. Mungai
	Port Khronos OpenCL headers to guix before building this package.
2016-03-08	Add Khronos OpenCL ICD	Dennis E. Mungai
	Ported to guix.
2016-03-08	Add ocl-icd package to GNU Guix	Dennis E. Mungai
	Added the Opensource reference OpenCL ICD, a dependency for Arrayfire and other OpenCL runtimes on GNU Guix
2016-03-07	Added transitional package llvm-3.7.1	Dennis E. Mungai
	Needed by POCL, version bumped.
2016-03-07	Add clang-runtime as a dependency.	Dennis E. Mungai

2016-03-07	python2-pil was missing from gn2	pjotrp

2016-03-05	Guix paths to the tools	pjotrp

2016-03-04	Updated hash values.	Dennis E. Mungai
	Changed with new commits to Arrayfire.
2016-03-04	Bumped up to v.3.3.1-hotfix.	Dennis E. Mungai
	Fixes a bunch of build bugs
2016-03-04	Add afnumpy to guix	Dennis E. Mungai
	afnumpy is a GPGPU - accelerated drop-in to numpy
2016-03-04	python-mysqlclient: propagate the shared lib	pjotrp

2016-03-04	Merge branch 'master' of github.com:genenetwork/guix-bioinformatics	pjotrp

2016-03-04	GN2 is now a self contained package (except for the database)	pjotrp

2016-03-04	Merge pull request #8 from roelj/master	Pjotr Prins
	Add FREEC.
2016-03-03	Fix for home-page, synopsis and description of vcflib.	Roel Janssen

2016-03-03	License fix for Freebayes.	Roel Janssen

2016-03-03	Added genenetwork2-files-small	pjotrp

2016-03-03	Switch to cmake build system.	Dennis E. Mungai

2016-03-02	Add and port the Portable OpenCL package to guix	Dennis E. Mungai
	This is the POCL port to guix. It provides an open source , vendor neutral OpenCL ICD (Installable Client Driver), suitable for testing as a reference OpenCL platform. Regards, Brainiarc7.
2016-03-02	Add vcflib.	Roel Janssen

2016-03-02	Add FREEC.	Roel Janssen

2016-03-01	Merge pull request #7 from roelj/master	Pjotr Prins
	An untested freebayes package description
2016-03-01	Use the original Makefile to statically compile lz4.	Roel Janssen

2016-03-01	Changed Sambamba source.	Roel Janssen

2016-03-01	Add freebayes.	Roel Janssen

2016-03-01	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-01	Added glfw guix package	Dennis E. Mungai
	This is an open source, multi-platform library for creating windows with OpenGL contexts and receiving inputs and events. A common pipeline for applications such as Arrayfire that require access to OpenGL-OpenCL interops on multiple platforms.