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These packages are required in the propagated-inputs so that they can be run
locally.
* gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and
pytest to...
[propagated-inputs]: here.
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* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and
pytest-mock
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This patch adds a version of wfmash that builds and runs successfully
on RISC-V.
* gn/packages/riscv.scm: New file.
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* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.17d101b.
[arguments]: Substitute absolute path to git.
[inputs]: Add git-minimal.
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* gn/packages/gemini.scm (skribilo-with-gemtext-reader): New variable.
(tissue): Update to 0.1.0-0.e62965d.
[arguments]: Add "GUILE_AUTO_COMPILE=0" to #:make-flags.
[propagated-inputs]: Add skribilo-with-gemtext-reader.
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*
gn/services/databases.scm (<virtuoso-configuration>)[state-directory]:
New field.
* gn/services/databases.scm (virtuoso-shepherd-service): Use
state-directory.
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* gn/services/databases.scm (<virtuoso-configuration>)[server-ip,
server-port]: New fields.
* gn/services/databases.scm (virtuoso-shepherd-service): Use server-ip
and server-port.
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*
gn/services/databases.scm (<virtuoso-configuration>)[http-server-ip]:
New field.
* gn/services/databases.scm (virtuoso-shepherd-service): Use
http-server-ip.
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define-configuration does too much magic.
* gn/services/databases.scm (<virtuoso-configuration>): Redefine
using (guix records).
Export virtuoso-configuration?.
(virtuoso-shepherd-service): Represent a disabled port with #f.
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add more to description field
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* gn/packages/python.scm: New package.
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* gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Add
python-pytest-mock.
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* gn/packages/genenetwork.scm (genenetwork2): Update to
3.11-2.17652b1.
[arguments]: Restore the default install phase.
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Guix now prefers inputs as a plain list instead of an association
list. Modernize.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use
plain list instead of association list.
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coreutils and diffutils are implicit inputs of the
python-build-system. They don't have to be included explicitly.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Remove coreutils and diffutils.
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* gn/packages/genenetwork.scm (genenetwork3): Update to
0.1.0-2.83a7aa7.
[arguments]: Enable tests.
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Test inputs are not required to actually run the built program. They
should therefore be in native-inputs. They should not be propagated.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move
python-mypy, python-mypy-extensions, python-pylint, python-hypothesis
and python-pytest to ...
[native-inputs]: ... here.
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In the effort to improve automated testing, this commit adds two
python modules that are useful for the tests.
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* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-ijson.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
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* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
r-ctl.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
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* gn/packages/gemini.scm (tissue)[inputs]: Add guile-3.0.
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* gn/packages/gemini.scm (tissue): New variable.
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* upstreamed to GNU Guix
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* gn/packages/genenetwork.scm (python-seaborn-without-tests,
python-pingouin-with-working-python-seaborn): New variables.
(genenetwork3)[propagated-inputs]: Replace python-pingouin with
python-pingouin-with-working-python-seaborn.
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