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2020-08-09Remove upstreamed python packages.Efraim Flashner
upstreamed python-certipy, python-pamela, python-cfgraph. python-retrying already upstream
2020-08-09gn: python-schema-salad: Use same version of python-ruaml.yaml asEfraim Flashner
bh20-seq-resource
2020-08-05gn: python3-genenetwork2: Update package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [source]: Use github source tree to avoid build failures in `setup.py` which used old python 2 syntax. [propagated-inputs]: Use python-wrapper that maps `python3` command to `python`. Remove "python" from inherited propagated input. Remove unittest2 and mock inputs since they are already defined in python3's standard library. [arguments]: Inherit package arguments from genenetwork2 and only update '#phases and '#python args.
2020-08-05gn: python-htmlgen: Update to 2.0.0BonfaceKilz
* gn/packages/python.scm (python-htmlgen): [version]: Bump version to 2.0.0. [source]: Update hash. [propagated-inputs]: Remove "python-typing" since it causes errors to be raised when importing htmlgen in python3.8. Also, in Python 3.8 it's already provided by the standard library.
2020-08-05gn: Update gitea to 1.12.3.Efraim Flashner
2020-08-04gn: python3-genenetwork2: Remove hard coded variablesBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Use a filter to get the lists of packages to delete from the inherited propagated input.
2020-08-04gn: genenetwork2: Remove duplicate python2-scipy inputBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): Remove duplicate propagated-input
2020-08-04gn: python3-genenetwork2: Inherit from genenetwork2BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Rewrite package definiton to inherit from genenetwork2 package.
2020-08-04Merge branch 'build/python3-migration'BonfaceKilz
2020-08-04gn: python3-genenetwork: Rename unittest2 inputBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove duplicate requests inputBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Delete duplicate input
2020-08-04gn: python3-genenetwork2: Remove unnecessary commentsBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove python2-parallelBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork): Remove deprecated package
2020-08-04gn: python3-genenetwork2: Remove python-qtlreaperBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Remove deprecated python2-qtlreaper
2020-08-04gn: python3-genenetwork2: Add new package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Add it. Same as genenetwork2 for now.
2020-08-03gn: Upstream httpd22-mod-python-24 to guix-past.Efraim Flashner
2020-08-03python24-pyx python24-pyxlwriter moved to guix-pastEfraim Flashner
2020-08-03gn: Move graphviz-2.26 to guix-pastEfraim Flashner
2020-08-02genenetwork1: Use more packaged packagesEfraim Flashner
2020-08-02genenetwork1: Connect to the databaseEfraim Flashner
2020-08-02gn: Update crates for upstream name changesEfraim Flashner
2020-07-26A running genenetworkEfraim Flashner
2020-07-24genenetwork2: rename unittest2 inputBonfaceKilz
2020-07-24genenetwork2: add python2-mock and python-nose2 for easier testingBonfaceKilz
2020-07-24genenetwork2: add python2-coverageBonfaceKilz
2020-07-21gn: Remove more upstreamed packages.Efraim Flashner
2020-07-21gn: Upstream all mailman packagesEfraim Flashner
2020-07-20gn: Upstream many mailman zope packagesEfraim Flashner
2020-07-20gn: Update all mailman packagesEfraim Flashner
2020-07-19gn: Update python-schema-salad to 7Efraim Flashner
2020-07-19gn: python-schema-salad-7: enable tests.Efraim Flashner
2020-07-19gn: Add cwl-runner.Efraim Flashner
2020-07-19gn: Update cwltool to 3.0.20200710214758Efraim Flashner
2020-07-16gn: genenetwork1 container almost workingEfraim Flashner
2020-07-15Update mod-python and httpd package combinationsEfraim Flashner
2020-07-08gn: Update python24-pyx definitionEfraim Flashner
2020-07-08gn: python24-setuptools upstreamed to guix-pastEfraim Flashner
2020-07-05gn: python24-numarray pushed to guix-past.Efraim Flashner
2020-07-05gn: Clean-up statistics.scmEfraim Flashner
Remove upstreamed packages and unneeded module imports.
2020-07-05gn: Clean-up module imports in gemma.scmEfraim Flashner
2020-07-05gn: gsl@1 available from guix-pastEfraim Flashner
2020-07-05gn: Use the guix-past channel.Efraim Flashner
Adjust for python-2.4 being in the guix-past channel.
2020-06-28gn: Add bh20-seq-resource serviceEfraim Flashner
2020-06-28gn: Prepare bh20-seq-resource for serviceEfraim Flashner
2020-06-25gn: Update bh20-seq-resource to 1.0-3.ae4cb3c.Efraim Flashner
2020-06-25gn: rust-gfa: Update to 0.2.2.Efraim Flashner
2020-06-24gn: rust-qtlreaper: use rust-rayon-1BonfaceKilz
Upstream renamed rust-rayon-1.3 to rust-rayon-1
2020-06-18rshiny service: more work on containerizingEfraim Flashner
2020-06-16gn: add pycares dependency to twintBonfaceKilz
2020-06-16gn: add twint as a dependency to gn2BonfaceKilz
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