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2023-09-26vg: Update package definitionEfraim Flashner
2023-09-26seqwish: Provide glibc-hwcaps versionEfraim Flashner
2023-09-26seqwish: Build and link against shared library.Efraim Flashner
2023-09-25seqwish: Make package tunable.Efraim Flashner
2023-09-25vg: Link with some shared libraries.Efraim Flashner
2023-09-25Delete python-mypy-0.981.Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-24pggb: Fix typo.Efraim Flashner
2023-09-24pggb: Provide version with glibc-hwcaps.Efraim Flashner
2023-09-24Provide copy of sdsl-lite with glibc-hwcapsEfraim Flashner
2023-09-24smoothxg: Link with odgiEfraim Flashner
2023-09-24smoothxg: Link with sdsl-liteEfraim Flashner
2023-09-24seqwish: Link with sdsl-libEfraim Flashner
2023-09-24pggb: Remove python-pycairoEfraim Flashner
2023-09-24rtg-tools: Use a smaller java implementationEfraim Flashner
2023-09-24pggb: Add htslib for tabix dependency.Efraim Flashner
2023-09-22Add pggb.Efraim Flashner
2023-09-22vg: Prepare for using a shared library.Efraim Flashner
2023-09-22vg: Update to 1.50.0.Efraim Flashner
2023-09-21rtg: Update package definition.Efraim Flashner
2023-09-21mummer: Update to 4.0.0rc1.Efraim Flashner
2023-09-21odgi: Add variant with glibc-hwcaps.Efraim Flashner
2023-09-21wfmash: Fix typos.Efraim Flashner
2023-09-21odgi: Update to 0.8.3.Efraim Flashner
2023-09-21Add smoothxgEfraim Flashner
2023-09-20seqwish: Update to 0.7.9.Efraim Flashner
2023-09-20gn: genenetwork2: Add htmx.Munyoki Kilyungi
* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add htmx.
2023-09-20gn: javascript: Add htmx.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-htmx): Add htmx.
2023-09-20remove crates existing upstreamEfraim Flashner
2023-09-20Add wfmash with glibc-hwcap libraries.Efraim Flashner
2023-09-19Add pafplotEfraim Flashner
2023-09-19Add fastixEfraim Flashner
2023-09-19Add vcfbubEfraim Flashner
2023-09-19gfaffix: Update to 0.1.5.Efraim Flashner
2023-09-19Update gem5Efraim Flashner
2023-09-19Update pluto notebook service and julia packagesEfraim Flashner
2023-09-19remove unneeded module importEfraim Flashner
2023-09-19Update pluto serverEfraim Flashner
2023-09-19update julia-visualsEfraim Flashner
2023-09-19Remove `rust-clap-4`Frederick Muriuki Muriithi
There is a `rust-clap-4` package upstream.
2023-09-06gn: gn-auth: Update yoyo and mypyFrederick Muriuki Muriithi
Update yoyo and mypy to allow the use of Python-3.10
2023-09-05gn: genenetwork: Update mypy and yoyoMunyoki Kilyungi
* gn/packages/genenetwork.scm: Import (guix packages). (genenetwork3): Use yoyo-migrations v8.2.0 and python-mypy v0.981. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05gn: python: Add python-mypy-0.981Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05gn: python: Add yoyo-migrations-8.2.0Munyoki Kilyungi
* gn/packages/python.scm: Import (gnu packages databases) and (guix hg-download). (yoyo-migrations-8.2.0): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05Adjust how native/propagated inputs are defined for GN3Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05Update pinned guix versionMunyoki Kilyungi
.guix-channel: Use guix at commit 8d70ff3a49f7cdf0eab93b3a1c54ec2f016afc4a. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Revert "Pin python to python@3.8.5"Munyoki Kilyungi
This reverts commit aaa6e53e7b623105d05e67e95186aba5b4671010.
2023-09-04Remove guix-forge channelMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Specify default branch for forge channelMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Add trailing slash to forge urlMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Fix channel introductionMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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