| Age | Commit message (Expand) | Author |
|---|
| 2019-10-22 | gn: python2.4: Skip another test....* gn/packages/python24.scm (python2.4)[arguments]: Also skip the
test_mhlib.py test.
| Efraim Flashner |
| 2019-10-22 | gn: web-font-awesome: Update for upstream Guix changes....* gn/packages/web.scm (web-font-awesome)[inherit]: New field, inherit
from font-awesome.
[arguments]: Rewrite for build-system and upstream changes.
[version, source, build-system, native-inputs, home-page, synopsis,
description, license]: Use inherited upstream values.
| Efraim Flashner |
| 2019-10-20 | gn: Deprecate r-shiny-gn....* gn/packages/r-shiny.scm (r-shiny-gn, js-strftime-0.9, js-es5-shim-2):
Deprecate packages.
| Efraim Flashner |
| 2019-10-18 | fixup repo for guix pull...* gn/packages/cwl.scm: GN's python-setuptools renamed to
python-setuptools-old,re-enable import.
* gn/packages/genenetwork.scm (my-deploy)[inputs]: Replace
search-bootstrap-binary with bootstrap-executable.
| Efraim Flashner |
| 2019-10-18 | gn: rust-qtlreaper: Manually provide dependencies....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually
provide all the crates needed to build the package.
* gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all
inputs for all crates.
| Efraim Flashner |
| 2019-10-16 | gn: bxd-power-calculator-app: Provide alternate locations for csv file....* gn/packages/bioinformatics.scm (bxd-power-calculator-app)[inputs]:
Download csv datasets file from archive.org. Also note its location in
IPFS should it become necessary later.
| Efraim Flashner |
| 2019-10-16 | gn: bxd-power-calculator-app: Bind to port 3978. | Efraim Flashner |
| 2019-10-16 | gn: rn6-assembly-error-app: Create launcher script....* gn/packages/bioinformatics.scm (rn6-assembly-error-app)[arguments]:
Remove some library substitutions. Fix location of png directory. Create
launcher script.
[inputs]: Add r-minimal. Move r-ggplot2, r-shiny ...
[propagated-inputs]: ... to here. Add r.
| Efraim Flashner |
| 2019-10-16 | gn: Add bxd-power-calculator-app....* gn/packages/bioinformatics.scm (bxd-power-calculator-app): New variable.
| Efraim Flashner |
| 2019-10-10 | Merge remote-tracking branch 'origin/core-updates' | Efraim Flashner |
| 2019-10-07 | gn: Update and add some crates | Efraim Flashner |
| 2019-10-07 | gn: Update some crates. | Efraim Flashner |
| 2019-10-06 | gn: rust-qtlreaper: Update test results....* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Add custom
phase to update the expected test results with the new library versions.
core-updates | Efraim Flashner |
| 2019-10-06 | gn: bnw: Build with gcc-5....* gn/packages/bnw.scm (bnw)[native-inputs]: Add gcc-5.
| Efraim Flashner |
| 2019-10-06 | gn: python2.4: Update for core-updates merge....* gn/packages/python24.scm (python2.4)[arguments]: Update custom
'create-setup-local phase with new inputs. Add custom
'patch-rpc-location and 'skip-crypt-module phases. Skip more tests in
custom 'delete-failing-tests phase. Remove inherited make-flags.
[inputs]: Add libnsl, libtirpc, openssl-1.0. Remove openssl.
[properties]: Remove field.
| Efraim Flashner |
| 2019-10-04 | gnu: octave@3.4.3: Build with gcc-5....This is in preparation of the core-updates merge, with the default GCC
switching to gcc-7.
* gn/packages/maths.scm (octave@3.4.3)[native-inputs]: Add gcc-5.
| Efraim Flashner |
| 2019-10-04 | gn: octave@3.4.3: Use gnulib package....* gn/packages/maths.scm (octave-3.4.3)[arguments]: Add new phase, get
'fseeko.c' from gnulib package.
[native-inputs]: Remove 'fseeko.c', add gnulib.
| Efraim Flashner |
| 2019-10-04 | gn: Add gnulib....* gn/packages/gnulib.scm (gnulib): New variable
| Efraim Flashner |
| 2019-10-02 | gn: Add javascript-jquery-ui, js-jquery-ui....* gn/packages/javascript.scm (javascript-jquery-ui, js-jquery-ui): New
variables.
| Efraim Flashner |
| 2019-09-29 | gn: Add javascript-j3-tip....* gn/packages/javascript.scm (javascript-d3-tip): New variable.
| Efraim Flashner |
| 2019-09-29 | gn: Add javascript-md5, js-md5....* gn/packages/javascript.scm (javascript-md5, js-md5): New variables.
| Efraim Flashner |
| 2019-09-29 | gn: Add javascript-typeahead, js-typeahead....* gn/packages/javascript.scm (javascript-typeahead, js-typeahead): New
variables.
| Efraim Flashner |
| 2019-09-29 | gn: Fixup more crates | Efraim Flashner |
| 2019-09-29 | gn: rn6-assembly-error-app: Update to 0.12....* gn/packages/bioinformatics.scm (rn6-assembly-error-app): Update to 0.12.
[license]: Update license.
| Efraim Flashner |
| 2019-09-26 | gn: Add javascript-plotly....* gn/packages/javascript.scm (javascript-plotly): New variable.
| Efraim Flashner |
| 2019-09-26 | gn: Add javascript-parsley, js-parsley....* gn/packages/javascript.scm (javascript-parsley, js-parsley): New
variables.
| Efraim Flashner |
| 2019-09-26 | gn: Add javascript-ckeditor....* gn/packages/javascript.scm (javascript-ckeditor): New variable.
| Efraim Flashner |
| 2019-09-26 | gn: web-bootstrap-3: Fix font references....* gn/packages/web.scm (web-bootstrap-3)[arguments]: Hardcode location of
font directory.
(web-bootstrap-3.3)[inherit]: Inherit from web-bootstrap-3.
| Efraim Flashner |
| 2019-09-26 | gn: Add rn6-assembly-error-app....* gn/packages/bioinformatics.scm (rn6-assembly-error-app): New variable.
| Efraim Flashner |
| 2019-09-26 | gn: Fixup more crates | Efraim Flashner |
| 2019-09-25 | gn: Fixup more crates. | Efraim Flashner |
| 2019-09-23 | gn: Add javascript-jstat, js-jstat....* gn/packages/javascript.scm (javascript-jstat, js-jstat): New
variables.
| Efraim Flashner |
| 2019-09-23 | gn: Add javascript-jscolor, js-jscolor....* gn/pakcages/javascript.scm (javascript-jscolor, js-jscolor): New
variables.
| Efraim Flashner |
| 2019-09-23 | gn: Add javascript-chroma, js-chroma....* gn/packages/javascript.scm (javascript-chroma, js-chroma): New
variables.
| Efraim Flashner |
| 2019-09-23 | gn: Add javascript-nouislider, js-nouislider....* gn/packages/javascript.scm (javascript-nouislider, js-nouislider): New
variables.
| Efraim Flashner |
| 2019-09-23 | gn: genenetwork2: Use packaged javascript-colorbox....* gn/packages/genenetwork.scm (genenetwork2)[inputs]: Add
javascript-colorbox's source.
[arguments]: Replace vendored javascript-colorbox with our own.
| Efraim Flashner |
| 2019-09-22 | gn: Add javascript-colorbox, js-colorbox....* gn/packages/javascript.scm (javascript-colorbox, js-colorbox): New
variables.
| Efraim Flashner |
| 2019-09-22 | gn: Add javascript-smart-time-ago, js-smart-time-ago....* gn/packages/javascript.scm (javascript-smart-time-ago,
js-smart-time-ago): New variables.
| Efraim Flashner |
| 2019-09-22 | gn: Add js-underscore....* gn/packages/javascript.scm (js-underscore): New variable.
| Efraim Flashner |
| 2019-09-22 | gn: Add javascript-underscore....* gn/packages/javascript.scm (javascript-underscore): New variable.
| Efraim Flashner |
| 2019-09-22 | gn: web-bootstrap-3: Correct input source....* gn/packages/web.scm (web-bootstrap-3)[native-inputs]: Use the source
from thie package, not the inherited one.
| Efraim Flashner |
| 2019-09-22 | gn: Add web-bootstrap-3.3....* gn/packages/web.scm (web-bootstrap-3.3): New variable.
| Efraim Flashner |
| 2019-09-17 | gn: Upstreamed some crates | Efraim Flashner |
| 2019-09-16 | gn: Add more crates | Efraim Flashner |
| 2019-09-11 | gn: Add qctool....* gn/packages/bioinformatics.scm (qctool): New variable.
| Efraim Flashner |
| 2019-09-11 | gnu: Add bamaddrg....* gn/packages/bioinformatics.scm (bamaddrg): New variable.
| Efraim Flashner |
| 2019-09-09 | gn: Move r-shiny-gn to its own module....* gn/packages/r-shiny.scm (r-shiny-gn, js-strftime-0.9, js-es5-shim-2):
Move here.
| Efraim Flashner |
| 2019-09-08 | gn: Add r-shiny-gn....* gn/packages/statistics.scm (r-shiny-gn): New variable.
* gn/packages/javascript.scm (js-strftime-0.9, js-es5-shim-2): New
variables.
| Efraim Flashner |
| 2019-09-08 | gn: Add web-bootstrap-3....* gn/packages/web.scm (web-bootstrap-3): New variable.
| Efraim Flashner |
| 2019-09-06 | Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticsgn-latest-20190905 | Pjotr Prins |
