guix-bioinformatics - Bioinformatics packages for GNU Guix

Age	Commit message (Collapse)	Author
2016-10-28	Add the ruby-mechanize gem and dependencies	Muriithi Frederick Muriuki
	- Add the ruby-mechanize gem and the dependent packages to the list of available ruby packages
2016-08-16	Updated and fixed plink-nggn-stable	pjotrp

2016-08-16	Erlang and Elixir moved into main line	pjotrp

2016-08-14	python2-pil: freetype include file moved	pjotrp

2016-08-14	GN2: reintroducing python2-pil	pjotrp

2016-08-14	Getting GN2 ready for new build - plink-ng is disabled and should not be ↵	Pjotr Prins
	built with atlas and lapack (FIXME)
2016-08-13	python-pil: replace with pillow	Pjotr Prins

2016-05-15	Merge branch 'gn-latest' of github.com:genenetwork/guix-bioinformatics into ↵	Pjotr Prins
	gn-latest
2016-05-15	Disable ant - it gives an error	Pjotr Prins

2016-05-15	Merge pull request #14 from Brainiarc7/patch-2gn-latest	Pjotr Prins
	installation instructions for python2-numarray
2016-05-15	installation instructions for python2-numarray	Dennis E. Mungai
	One-liner correction.
2016-05-11	Merge pull request #13 from Brainiarc7/patch-1	Pjotr Prins
	r-biocprocesscore has been updated.
2016-05-11	r-biocprocesscore has been updated.	Dennis E. Mungai
	This should fix the genenetwork2 build issue, as noted on IRC.
2016-04-10	remove remarks	pjotrp

2016-04-05	Added bio-table and bio-vcf gems	pjotrp

2016-04-05	Merge pull request #12 from roelj/master	Pjotr Prins
	gn: Add sparql-query.
2016-04-04	gn: Add sparql-query.	Roel Janssen
	* gn/packages/sparql-query.scm: New file.
2016-03-30	Small fixes and removed package now in main line	pjotrp

2016-03-30	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-24	Elixir fix path	pjotrp

2016-03-24	elixir: fix filename	pjotrp

2016-03-24	Added elixir	pjotrp

2016-03-24	Updated erlang by Leo	pjotrp

2016-03-23	This runs with gn-stable	pjotrp

2016-03-23	Merge	pjotrp

2016-03-23	Databases	pjotrp

2016-03-23	GN2 fix	pjotrp

2016-03-23	GN2 fixstable	Pjotr Prins

2016-03-23	Fixed hash	Pjotr Prins

2016-03-23	Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics	Roel Janssen

2016-03-23	gn: Add 4store.	Roel Janssen
	* gn/packages/4store.scm (4store): New variable. * 4store-fix-buildsystem.patch: New file.
2016-03-22	Fixed and added erlangdennis	Pjotr Prins

2016-03-20	Add mongodb.	Roel Janssen
	This package was rejected upstream because it contains the sources of libraries that are also available as shared libraries.
2016-03-19	Merge branch 'master' of github.com:Brainiarc7/guix-bioinformatics into dennis	Pjotr Prins

2016-03-19	Arrayfire now builds on GNU Guix	Dennis E. Mungai
	Mission accomplished. Praise the sun!!!
2016-03-19	Add more native deps	Dennis E. Mungai
	See the cmake configuration options used.
2016-03-19	Use the system's Boost Compute library as an input	Dennis E. Mungai
	See the CMake configuration string for details. Investigating a latent build failure.
2016-03-19	Broken build, still cannot detect Boost.Compute	Dennis E. Mungai
	To be fixed. To build, you need to disable the OpenCL back-end.
2016-03-19	Package successfully ported to GNU Guix	Dennis E. Mungai
	Praise the sun !
2016-03-19	Fixes. Package still fails to build	Dennis E. Mungai
	Investigate and patch later.
2016-03-19	ported gtest to guix	Dennis E. Mungai
	Cleanup pending. Package builds. Need to trim inputs.
2016-03-18	fix conflict	pjotrp

2016-03-18	Merge branch 'master' into dennis	pjotrp

2016-03-18	Mereg	pjotrp

2016-03-18	Added clBLAS	Dennis E. Mungai
	Build fails due to googletest's missing target "install". Investigating.
2016-03-18	Ported clFFT to GNU Guix	Dennis E. Mungai
	Package builds successfully.
2016-03-18	Package now builds on GNU Guix	Dennis E. Mungai
	Caveats: Only the CPU back-end builds at the moment. Needed inputs for OpenCL backends: clFFT and clBLAS.
2016-03-18	Use proper formatting for License lists	Dennis E. Mungai
	Also updates the Arrayfire fetch URL to the one hosted by Arrayfire as Github's generated tarballs do not package the required submodules.
2016-03-18	WIP: Add varscan.	Roel Janssen
	The JAR construction cannot contain a wild-card. That has to be fixed.
2016-03-18	Bump version to v3.3.3	Dennis E. Mungai
	Also change licensing schema with #prefix (es). Solves namespace problems. Also added wget as an input (As it's needed as a fallback incase checksums for Boost are invalid).