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2020-10-31gn: Add new python-mistune-2.0.0a5 packageBonfaceKilz
2020-10-31gn: Delete genenetwork3 packageBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): Delete it. The python3 version of genenetwork2 is already packaged as python3-genenetwork2.
2020-10-27gn: python2-parallel: Remove upstreamed python2 libraryBonfaceKilz
2020-10-08gn: python3-genenetwork2: Update python-rpy2 inputBonfaceKilz
2020-10-08gn: Add new package python-rpy2-2.9BonfaceKilz
* gn/packages/python.scm (python-rpy2-2.9): Add it. Breaking changes are introduced in v3.0.0. See https://rpy2.github.io/doc/latest/html/changes.html#release-3-0-0
2020-10-08gn: Update python2-parallelBonfaceKilz
* gn/packages/python.scm (python2-parallel): Update to v1.6.6; v1.6.4 is no longer available from the website.
2020-09-27Added python testing framework packagespjotrp
2020-09-23gn: Add python2-mysqlclient.Efraim Flashner
2020-09-23upstream some packagesEfraim Flashner
2020-09-23genenetwork1: Update package and serviceEfraim Flashner
2020-09-16ratspub: Update to 0.4.3.Efraim Flashner
2020-09-15ratspub: Add support for building docker containerEfraim Flashner
2020-09-14gn: adjust to package movementsEfraim Flashner
2020-09-13r-qtl moved to (gnu packages cran)Efraim Flashner
2020-09-10ratspub: create containerEfraim Flashner
2020-09-09ratspub: Update to 0.4.2Efraim Flashner
2020-09-07ratpub: Use js-filesaver-1.3.2.Efraim Flashner
2020-09-06vg: Update to 1.26.1.Efraim Flashner
2020-09-06jupyterhub: python-docker-py renamed to python-dockerEfraim Flashner
2020-09-03gn: js-md5: Use correct md5 javascript libraryBonfaceKilz
* gn/packages/javascript.scm (javascript-md5): Delete it. * gn/packages/javascript.scm (js-md5): Use correct library. Use 2.10.0 from <https://github.com/blueimp/JavaScript-MD5>. See: <https://github.com/genenetwork/genenetwork2/issues/435>
2020-09-03gn: Provide genotypes folder in container.Efraim Flashner
2020-09-03python24-qtlreaper: Update to 1.11-gn1.442c217.Efraim Flashner
Also re-indent.
2020-09-03move python24-mysqlclient to 1.2.3.Efraim Flashner
2020-09-02ratspub: Update to 0.4.1.Efraim Flashner
2020-09-01update vgEfraim Flashner
2020-08-31gn: python3-genenetwork2: Propagate python-mypyBonfaceKilz
2020-08-31rust-gfa-0.6 upstreamedEfraim Flashner
2020-08-30gn: remove upstreamed crateEfraim Flashner
2020-08-30gn: Remove duplicate rust-gfaEfraim Flashner
2020-08-30Add vgEfraim Flashner
2020-08-28New package python-pandas-plinkpjotrp
2020-08-28Updating gemma-gn2pjotrp
2020-08-28Starting at gn-proxypjotrp
2020-08-28Add racket to genenetwork2pjotrp
2020-08-28Remove unused packagespjotrp
2020-08-26updatesEfraim Flashner
2020-08-26add mysql-5.0, mysql-5.5Efraim Flashner
2020-08-20gn: python3-genenetwork2: Propagate python-rpy2BonfaceKilz
* gn/packages/genenetwork.scm: (python3-genenetwork2)[propagated-inputs]: Add python-rpy2
2020-08-19gn: Add gfautil.Efraim Flashner
2020-08-18genenetwork1: patch more filesEfraim Flashner
2020-08-18gn: Use local links for genenetwork1.Efraim Flashner
2020-08-18gn: Add python24-rpy2Efraim Flashner
2020-08-18gn: Add r-minimal-2 and some R packagesEfraim Flashner
2020-08-16genenetwork1: Extend, don't replace PythonPath in service.Efraim Flashner
2020-08-14gn: ratspub: Update to 0.4.0.Efraim Flashner
2020-08-10gn: genenetwork2: Add pillow as one of the propagated-inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python2-pillow
2020-08-09Remove upstreamed python packages.Efraim Flashner
upstreamed python-certipy, python-pamela, python-cfgraph. python-retrying already upstream
2020-08-09gn: python-schema-salad: Use same version of python-ruaml.yaml asEfraim Flashner
bh20-seq-resource
2020-08-05gn: python3-genenetwork2: Update package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [source]: Use github source tree to avoid build failures in `setup.py` which used old python 2 syntax. [propagated-inputs]: Use python-wrapper that maps `python3` command to `python`. Remove "python" from inherited propagated input. Remove unittest2 and mock inputs since they are already defined in python3's standard library. [arguments]: Inherit package arguments from genenetwork2 and only update '#phases and '#python args.
2020-08-05gn: python-htmlgen: Update to 2.0.0BonfaceKilz
* gn/packages/python.scm (python-htmlgen): [version]: Bump version to 2.0.0. [source]: Update hash. [propagated-inputs]: Remove "python-typing" since it causes errors to be raised when importing htmlgen in python3.8. Also, in Python 3.8 it's already provided by the standard library.
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-03 22:40:11 +0000