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2022-12-11Revert "gn: rust-quick-csv-0.1: remove duplicated package"Efraim Flashner
This reverts commit fb631515ccf985e6e89c6cb03a86833aa3b963c6. rust-quick-csv-0.1 isn't actually in Guix yet.
2022-12-08Minor fixes aiming for genenetwork1Pjotr Prins
2022-12-06gn: (rust-clap-4): Update dependencyFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (rust-clap-4): Change from rust-terminal-size-0.2 which is undefined to rust-terminal-size-0.1
2022-12-06gn: (julia-visuals): Slurp expressions to fix package definitionFrederick Muriuki Muriithi
* gn/packages/julia.scm (julia-visuals): slurp in sexps to fix the package definition.
2022-12-06gn: rust-quick-csv-0.1: remove duplicated packageFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (rust-quick-csv-0.1): Remove package that is also defined in mainline guix
2022-12-06gn: (genenetwork3): Update to 0.1.0-2.e781996Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to version 0.1.0-2.e781996
2022-12-05Commented Julia inputs that no longer workpjotrp
2022-12-04gn: Replace IPFS links in python24 and python with GN file serverPjotr Prins
2022-11-30gn: Remove upstreamed packagesEfraim Flashner
2022-11-29gn: (gn-rust-correlation): Update to 0.1.4-0.a22381eAlexanderKabui
* gn/packages/crates-io.scm (gn-rust-correlation): 0.1.4--0.a22381e
2022-11-27gn: Fix guix pull.Efraim Flashner
2022-11-16gn: Add graph-genotyper and dependent packagesEfraim Flashner
2022-11-13gn: pgr-tk: Unbundle agc.Efraim Flashner
2022-11-10gn: Add missing imports and package licenses.Efraim Flashner
2022-11-10gn: Add pgr-tkEfraim Flashner
2022-11-07gn: Add missing crateEfraim Flashner
2022-11-03gn: (gn/packages/genenetwork.scm): Add yoyo-migrations as dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm: add yoyo-migrations as a dependency.
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings.Arun Isaac
Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings.
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739
2022-10-24gn: Fix ruby module licensesEfraim Flashner
2022-10-24gn: Update crates for upstream changesEfraim Flashner
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings.
2022-10-18gn: genenetwork3: Depend on python-pymonad.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad.
2022-10-18gn: genenetwork3: Depend on python-click.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click.
2022-10-11gn: (gn-rust-correlation): Update to 0.1.4-0.b82a93bFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation): 0.1.4-0.b82a93b
2022-10-09README: link back to our issue trackerPjotr Prins
2022-10-05gn: (genenetwork2): Update to 3.11-2.1328932Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.1328932
2022-10-05gn: (genenetwork3): Update to 0.1.0-2.fe1b8beFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.fe1b8be
2022-09-30gn: (genenetwork2): Update to 3.11-2.6f1a66bFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.6f1a66b
2022-09-30gn: (genenetwork3): Update to 0.1.0-2.0d365ddFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.0d365dd
2022-09-30gn: Update gn-rust-correlation to 0.1.4-0.fd85c0fFrederick Muriuki Muriithi
* gn/packages/crates-io (gn-rust-correlation): Update to 0.1.4-0.fd85c0f
2022-09-24gn: Update blobtools.Efraim Flashner
2022-09-20gn: Add blobtools.Efraim Flashner
2022-09-20genecup: Update package.Efraim Flashner
Replace PYTHONPATH with GUIX_PYTHONPATH. Remove trailing #t from phases.
2022-09-20bnw: Update packageEfraim Flashner
Remove trailing #t from phases Replace PYTHONPATH with GUIX_PYTHONPATH
2022-09-16gn: (genenetwork-qc): Update to 0.0.1-2.b735caeFrederick Muriuki Muriithi
* gn/packages/quality-control.scm (genenetwork-qc): Update to 0.0.1-2.b735cae
2022-09-14gn: genenetwork2: Depend on python-xapian-bindings.Arun Isaac
* gn/packages/genenetwork.scm: Import (gnu packages search). (genenetwork2)[propagated-inputs]: Add python-xapian-bindings.
2022-09-14gn: genenetwork2: Depend on python-pymonad.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-pymonad.
2022-09-14Upgrade guix channel to 5b35626374.Arun Isaac
2022-09-14Rename genenetwork 1 container file to genenetwork1.scm.Arun Isaac
2022-09-08gn: genenetwork-qc: Update to 0.0.1-2.38af157.Frederick Muriuki Muriithi
* gn/packages/quality-control.scm (genenetwork-qc) Update to 0.0.1-2.38af157.
2022-09-07gn: genenetwork2: Update to 3.11-2.be09d5a.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.be09d5a.
2022-09-07gn: genenetwork3: Update to 0.1.0-2.1e1c9d8.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.1e1c9d8.
2022-08-31gn: genenetwork-qc: Update to 0.0.1-2.ae1fbc0.Frederick Muriuki Muriithi
* gn/packages/quality-control.scm (genenetwork-qc) Update to 0.0.1-2.ae1fbc0.
2022-08-30gn: genenetwork3: Update to 0.1.0-2.45b9bcb.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.45b9bcb.
2022-08-30gn: genenetwork2: Update to 3.11-2.1c384a1.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.1c384a1.
2022-08-30gn: genenetwork3: Update to 0.1.0-2.9ef2ddc.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.9ef2ddc.
2022-08-29Do not require networking for virtuoso shepherd-service.Arun Isaac
* gn/services/databases.scm (virtuoso-shepherd-service)[requirement]: Delete.
2022-08-22Set permissions on virtuoso state directory.Arun Isaac
* gn/services/databases.scm (virtuoso-activation): New function. (virtuoso-service-type): Extend activation-service-type with virtuoso-activation.
2022-08-20Log messages from virtuoso service.Arun Isaac
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